Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1604 ATGCCAGAAGCTTATGATCAGGAAGGGGTTGTTAATCAGGAGAAGAGATTTGCTGTGGCTATGCAGCGCTACAGGGACCCAAATGCTGAGGAGAAAATGAACCCCTTTGCTGAACAagaggcatgggaggagcatcaAATTGTTTCTTCCATATCTATTGTCTTCTTTATTCAGGAGGACAGGAAATCGTTACCCATATATGCTTTTCGGGATGAATTGATCGAAGCTGTTAATCAACATCAGGTACTTGTTATCGTTGGTGAAACCGGTTCTGGAAAGACTACACAGATACCTCAATATCTTCATGAAGCCGGCTACACCAAGAAAGGAAAGATTGCATGTACACAGCCACGACGTGTTGCTGCTATGAGTGTTGCTGCTCGAGTCTCTCAAGAAATGGGTGTTAAACTAGGACATGAGGTTGGTTACTCCATTCGTTTTGAGGACTGCACATCGGAGAAGACTATTCTGAAATATATGACGGATGGAATGTTGTTGAGGGAATTTCTTGGAGAACCTGATCTAGCAAGCTACAGTGTTGTGATGGTGGATGAGGCTCATGAAAGAACACTTTCAACtgatattttgtttggattAGTAAAGGATATTTCCCGTTTCCGGCCTGATCTTAAGCTGCTGATCTCTAGTGCCACGCTTGATGCAGAGAAGTTCAGTGATTATTTTGATTCTGCTCCTATATTCAAAATTCCAGGGAGGCGATATCCAGTTGAAATACATTACACTAAGGCACCGGAAGCTGACTACTTAGATGCTGCTATTGTAACGGCTCTCCAAATTCATGTCACTCAATCTCCTGGAGATATATTGGTATTCTTTACTGGTCAAGAAGAAATTGAAACAGCCGAAGAGATCATGAAGCATCGAACTAGGGGCCTGGGGACAAAAATTGCTGAGCTTATTATATGCCCTATATATGCGAACCTACCAACTGAGCTGCAAGCTAAGATATTTGAACCCACTCCAGAAGGGGCACGGAAAGTAGTCCTTGCTACTAATATTGCTGAAACGTCATTGACAATTGATGGGATCAAGTATGTCATTGATCCAGGGTTTTGTAAAATGAAAAGTTATAATCCAAGAACAGGAATGGAGTCTTTGTTAATAACACCAATTTCAAAGGCTTCTGCAAATCAAAGAGCTGGCCGCTCTGGAAGAACAGGTCCTGGAAAGTGCTTCAGGTTGTATACTGCTTACAATTATTACCATGATTTGGATGATAACACTGTGCCAGAAATACAGCGGACTAATCTTGCAAATGTAGTTCTGACCTTAAAAAGTCTTGGGATTCATGATTTGCTGCACTTCGATTTTATGGATCCTCCTCCTGCTGAGGCTTTATTGAAAGCCCTGGAGCTTCTATTTGCATTAAGTGCTTTAAATAAGCTTGGCGAGTTAACAAAGGTAGGTAGGCGGATGGCAGAGTTTCCACTTGATCCCATGTTATCTAAAATGATCGTAGCTTCAGACAAGTACAAGTGTTCAGATGAGATCATCTCTATTGCTGCTATGCTCTCTGTTGGGAACTCAATATTCTACCGTCCAAAGGATAAACAAGTACATGCAGATAATGCTCGATTGAATTTTCATACTGGAAATGTTGGAGATCATGTTGCATTGCTAAAGGTTTACAATTCATGGAAGGAGACAAATTACTCAACACAGTGGTGTTATGAAAATTATATACAGGTGAGAAGTATGAAACGGGCAAGGGATATTCGAGATCAACTGGCTGGTCTTTTAGAGAGGGTTGAGATTGAACTGACTTCAAATGATAATGATCTAGATGccataaaaaaatctataacaTCTGGCTTTTTCCCGCATTCTGCGAGGCTACAAAAGAATGGATCTTATCGGACTGTAAAACATCCGCAAACTGTTCATATACATCCTAGCTCCGGGCTGGCCCAGGTGCTTCCAAGATGGGTTGTATATCATGAATTGGTTCTTACTACCAAGGAATATATGAGACAGGTGACGGAATTAAAGCCAGATTGGTTGGTGGAGATAGCCCCTCACTATTACCAGCTTAAGGATGTTGAAGACTGTGGACATGAGAAAACGGGTCCCTTAAAGTAG 2100 0.4052 MPEAYDQEGVVNQEKRFAVAMQRYRDPNAEEKMNPFAEQEAWEEHQIVSSISIVFFIQEDRKSLPIYAFRDELIEAVNQHQVLVIVGETGSGKTTQIPQYLHEAGYTKKGKIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAPEADYLDAAIVTALQIHVTQSPGDILVFFTGQEEIETAEEIMKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLITPISKASANQRAGRSGRTGPGKCFRLYTAYNYYHDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLHFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHVALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTSNDNDLDAIKKSITSGFFPHSARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPDWLVEIAPHYYQLKDVEDCGHEKTGPLK 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1604 699 CDD DEXHc_DHX16 64 236 - -
Sto3g1604 699 Pfam DEAD/DEAH box helicase 71 222 IPR011545 GO:0003676|GO:0005524
Sto3g1604 699 SMART ha2_5 455 547 IPR007502 GO:0004386
Sto3g1604 699 PANTHER ATP-DEPENDENT RNA HELICASE 57 694 - -
Sto3g1604 699 PANTHER ATP-DEPENDENT RNA HELICASE 1 50 - -
Sto3g1604 699 Pfam Helicase associated domain (HA2) 456 530 IPR007502 GO:0004386
Sto3g1604 699 Gene3D - 440 597 - -
Sto3g1604 699 Coils Coil 573 593 - -
Sto3g1604 699 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 604 681 IPR011709 -
Sto3g1604 699 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 74 237 IPR014001 -
Sto3g1604 699 Pfam Helicase conserved C-terminal domain 266 394 IPR001650 -
Sto3g1604 699 SMART ultradead3 62 246 IPR014001 -
Sto3g1604 699 CDD SF2_C_RHA 241 402 - -
Sto3g1604 699 Gene3D - 11 239 IPR027417 -
Sto3g1604 699 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 260 435 IPR001650 -
Sto3g1604 699 SMART helicmild6 289 394 IPR001650 -
Sto3g1604 699 PANTHER OS05G0389800 PROTEIN 57 694 - -
Sto3g1604 699 PANTHER OS05G0389800 PROTEIN 1 50 - -
Sto3g1604 699 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 179 188 IPR002464 -
Sto3g1604 699 Gene3D - 240 415 IPR027417 -
Sto3g1604 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 588 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1604 Sto-Chr3 11956050 11962396 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1604 K12813 - gmx:100809559 1223.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1604 3 11956050 11962396 Sto3g1604 3 11956050 11962396 ECH