Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1601 ATGGGCTGTTCCGCCAGCCAAAACGCCGACGCCAAGGCCACTAGGGTTGCACGGTGGCGATCCACCGGCATTGTTGCTTTGCGGGACTCCAAATTGAAGACATTTCCTGATGAAATTCTTGATTTGGACCAATCTGTACGCACTCTTGATTTGACCCATAATCGAATACGTATGTATTTTCCccccaattattttattttctatttaataaAGAGCAGGTGTTGCTGGTATAGTGTTGCTGGCATTCCCATGGAAATGAGCAAATTAATCAACTTGCAGCGCCTCATATTAGCTCATAACCTCATTGAGAGCCTACCAGTGAATTTGGGGAAACTTCAATCTCTAAAAATCATGATCCTTGATGGAAATAGAATTACTTCCTTGCCCGATGAATTGGGCCAATTGGTGAAGCTTGAGCAGTTATCCATCTCAGGAAATTTGTTAACATGTTTGCCTGTGACTATTGGCAGCATGCGAAACCTGGTGATTTTAAATGTGTCAAATAACAAGTTAAAATCTCTTCCCGAATCTGTTGGAAGTTGCTTCTCTCTGGAAGAGTTACAAGCCAATAATAATCTTATTGAAGATCTTCCCCCTTCAGTATGCAATCTCACTAACTTGAAGTCACTTAGCTTAGATAACAATAACGTGAAGCAGATACCGATGAACCTATTAAAGGACTGCAAAGCTTTGCAGAACATATCTCTACACAATAACCCTATATCAATGGATCAGTTTCAACAGATGGACGGTTTTCAAGAGTTCGAAGCAAGGAGGAGAAAGAAGTTTGACAAACAAATTGATTCCAATGTGATGATCAGTTCCAAAGGTCTTGATGAGGGAGTTGATCTATGA 855 0.4 MGCSASQNADAKATRVARWRSTGIVALRDSKLKTFPDEILDLDQSVRTLDLTHNRIRMYFPPNYFIFYLIKSRCCWYSVAGIPMEMSKLINLQRLILAHNLIESLPVNLGKLQSLKIMILDGNRITSLPDELGQLVKLEQLSISGNLLTCLPVTIGSMRNLVILNVSNNKLKSLPESVGSCFSLEELQANNNLIEDLPPSVCNLTNLKSLSLDNNNVKQIPMNLLKDCKALQNISLHNNPISMDQFQQMDGFQEFEARRRKKFDKQIDSNVMISSKGLDEGVDL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1601 284 PANTHER LEUCINE-RICH REPEAT-CONTAINING 79 276 - -
Sto3g1601 284 PANTHER LEUCINE-RICH REPEAT-CONTAINING 2 56 - -
Sto3g1601 284 SMART LRR_bac_2 89 108 - -
Sto3g1601 284 SMART LRR_bac_2 183 200 - -
Sto3g1601 284 SMART LRR_bac_2 112 131 - -
Sto3g1601 284 SMART LRR_bac_2 158 177 - -
Sto3g1601 284 SMART LRR_bac_2 135 154 - -
Sto3g1601 284 SMART LRR_typ_2 204 227 IPR003591 -
Sto3g1601 284 SMART LRR_typ_2 135 157 IPR003591 -
Sto3g1601 284 SMART LRR_typ_2 89 111 IPR003591 -
Sto3g1601 284 SMART LRR_typ_2 112 134 IPR003591 -
Sto3g1601 284 SMART LRR_typ_2 158 181 IPR003591 -
Sto3g1601 284 ProSiteProfiles Leucine-rich repeat profile. 160 181 IPR001611 GO:0005515
Sto3g1601 284 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN-RELATED 2 56 - -
Sto3g1601 284 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN-RELATED 79 276 - -
Sto3g1601 284 Pfam Leucine rich repeat 183 241 IPR001611 GO:0005515
Sto3g1601 284 Pfam Leucine rich repeat 91 148 IPR001611 GO:0005515
Sto3g1601 284 ProSiteProfiles Leucine-rich repeat profile. 114 135 IPR001611 GO:0005515
Sto3g1601 284 SUPERFAMILY L domain-like 26 244 - -
Sto3g1601 284 Gene3D Ribonuclease Inhibitor 8 272 IPR032675 -
Sto3g1601 284 ProSiteProfiles Leucine-rich repeat profile. 91 113 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1601 Sto-Chr3 11935439 11939469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1601 21 247 Receptor kinase-like Gene Family AT4G04220 29.876 1.65e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1601 - - gmx:100807758 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1601 3 11935439 11939469 Sto3g1601 3 11935439 11939469 ECH