Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1577 ATGTTGATGCATATTCAGAGAAAAGCTGTCCCCTTTAATCTCAACCACCCTTTAACAATTTTGAGATTGACATCCTTCTCACAGTCTTCTTCTCAATCATCTCTGTCAGATCCATGTATCACAAACGCCATTCTTGATTGCAGAACCCATGAAGAGGCACTTCGTTACTTCAAGGATGCATCTAGACGGGTTAATGCAGTTAAAAATCCCCAGTTTTATGCTGCTATGATTCACATCTTAACAGGGGCTAAGCTGTATAGAGAAGCTGGTTGCTTGACAAAAGACCTGTTTCAGAAGCTCCAAAAGTCGCAGAAACCCCATGCTACATGCTCTTTTCTTTTTGACACtctcaatcggttagaaggctCTAAATTCAGCTCCAATGTATTTGGAGTTTTAATGGTTGCCTTCTGTGAGATGGGTTTTGTTGAGGAAGCCTTGTGGGTGTTTAAACAGTTAAGGGTTTTGCCTATGTTACAGGCTTGTAATGCACTTTTACATGGATTGGTCAAGATAGAAAGGTTTGATTTAATGTGGAGTATATATGGGGACATGTTATCACTTGGTTTTTCACCTACTGTTATCACGTATGGCATATTAATCCATTGTTCGTGTATTCAAGGTGACACGTTGAAAGCATGCAAGTTGTTCGATGAGATGGCTGAGAGGCAGATTGAACAGAATGTTGTGATATACACAATTCTTATACGTGCCCTTTGCAATGAGGGTAGAATGGCAGAAGCAGAGGACATGTTTAGGAAAATGAGAGAATCTGGCGTGGTTCCCAATTTGTACACTTATAATACTCTAATGGATGGGTATTGCAAGTTGATTAAATCCAGACAAGCTTTTGACTTGTTTCAAGACTTGCTTCATCATGACTTGCACCCAGATGTTGTCACATTTACTATACTTATAGATGTTCTGTGCAAAAAGGGTAATTTGAAAGCTGCCCAAAACTGTTTTGCTTATATGGCAAAATTTGGTGTTGTTCCTAATGCCTATGCATATAATTCCTTGATTGATGGCTACTGTAAGGCAGGGAACTTGGATGAAGCAATGCGTTTACAATTAGAAATGGAAAGGCTTGAAATTTTTCCAGATGTGTTCACATATAATATTCTCATCAAGGGTCTTAGTGACTCAGGTAGATTGGAAGAAGCTAATGGGTTATTGCAGAAAATGGACACAGCAGAGGTGCTTGCAAATTCTGTGACATACAATATAATTATCAATGGGTACTGTAAAGAAGGCAATATGGAGAGGGCTATTGAGGTGTGTTCCCAAATGACGGAAAGAAAAATAGAACCCAATGTCATCACATTTTCTACATTAATTGATGGGTTTTGCAAGATAGGAAACATAAAAGCAGCAATGGGTTTGTACACAGAAATGGTAATCAAAGGTAAGGTGCCAGATGTGGTTGCTTACACATCATTGATTGATGGACATTGTAAGGATGGGAACACACAAGAGGCTTTCAGGCTACACAAGGAGATGCTCGATGCAGGATTCGCGCCCAATGTATTTACAGTTTGTTGCTTAATGGATGGCCTTTTCAGAGATGGAAGAACTTCTGATGCAATTAAATTCTTCTTGGAGAAAACAGGAGGTGGTTACTCTAGAGATGATGGTAATGGCATTTTTTCTCCAAACATTGTGATTTATGCCATTCTGATTCAAGGGTTGTGTAAGGATGGACAAATCTTCAAGGCCACTAAGTTTTTTGCAGATATGAGAAATCAAGGTTTACAAACGGACATGCTAGTTTATGCTAACATGCTGCAGGCACATTTCCAATCCAAGCACATGCTTGATGTGATGATGCTGCATGCAGACATGGTGAAGTTGGGCGTGATGCCTAATGCTTTCATTCATCGTGTATTGTCTAGGGGTTATCAAGAAAATGGGGACATTAAATCAGCTCGAATGTGCTATGAGAATTTAATGGAGTATGGTATTCAGTGTTCTTAG 1974 0.3896 MLMHIQRKAVPFNLNHPLTILRLTSFSQSSSQSSLSDPCITNAILDCRTHEEALRYFKDASRRVNAVKNPQFYAAMIHILTGAKLYREAGCLTKDLFQKLQKSQKPHATCSFLFDTLNRLEGSKFSSNVFGVLMVAFCEMGFVEEALWVFKQLRVLPMLQACNALLHGLVKIERFDLMWSIYGDMLSLGFSPTVITYGILIHCSCIQGDTLKACKLFDEMAERQIEQNVVIYTILIRALCNEGRMAEAEDMFRKMRESGVVPNLYTYNTLMDGYCKLIKSRQAFDLFQDLLHHDLHPDVVTFTILIDVLCKKGNLKAAQNCFAYMAKFGVVPNAYAYNSLIDGYCKAGNLDEAMRLQLEMERLEIFPDVFTYNILIKGLSDSGRLEEANGLLQKMDTAEVLANSVTYNIIINGYCKEGNMERAIEVCSQMTERKIEPNVITFSTLIDGFCKIGNIKAAMGLYTEMVIKGKVPDVVAYTSLIDGHCKDGNTQEAFRLHKEMLDAGFAPNVFTVCCLMDGLFRDGRTSDAIKFFLEKTGGGYSRDDGNGIFSPNIVIYAILIQGLCKDGQIFKATKFFADMRNQGLQTDMLVYANMLQAHFQSKHMLDVMMLHADMVKLGVMPNAFIHRVLSRGYQENGDIKSARMCYENLMEYGIQCS 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1577 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Sto3g1577 657 Gene3D Tetratricopeptide repeat domain 398 467 IPR011990 GO:0005515
Sto3g1577 657 Gene3D Tetratricopeptide repeat domain 468 537 IPR011990 GO:0005515
Sto3g1577 657 Gene3D Tetratricopeptide repeat domain 327 397 IPR011990 GO:0005515
Sto3g1577 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Sto3g1577 657 PANTHER ATPASE EXPRESSION PROTEIN 3 24 639 - -
Sto3g1577 657 TIGRFAM PPR: pentatricopeptide repeat domain 440 474 IPR002885 -
Sto3g1577 657 TIGRFAM PPR: pentatricopeptide repeat domain 554 585 IPR002885 -
Sto3g1577 657 TIGRFAM PPR: pentatricopeptide repeat domain 195 227 IPR002885 -
Sto3g1577 657 TIGRFAM PPR: pentatricopeptide repeat domain 405 439 IPR002885 -
Sto3g1577 657 TIGRFAM PPR: pentatricopeptide repeat domain 335 369 IPR002885 -
Sto3g1577 657 TIGRFAM PPR: pentatricopeptide repeat domain 161 194 IPR002885 -
Sto3g1577 657 TIGRFAM PPR: pentatricopeptide repeat domain 370 400 IPR002885 -
Sto3g1577 657 TIGRFAM PPR: pentatricopeptide repeat domain 475 509 IPR002885 -
Sto3g1577 657 TIGRFAM PPR: pentatricopeptide repeat domain 265 299 IPR002885 -
Sto3g1577 657 TIGRFAM PPR: pentatricopeptide repeat domain 230 263 IPR002885 -
Sto3g1577 657 TIGRFAM PPR: pentatricopeptide repeat domain 300 334 IPR002885 -
Sto3g1577 657 Gene3D Tetratricopeptide repeat domain 212 326 IPR011990 GO:0005515
Sto3g1577 657 Gene3D Tetratricopeptide repeat domain 40 211 IPR011990 GO:0005515
Sto3g1577 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Sto3g1577 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Sto3g1577 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Sto3g1577 657 Pfam PPR repeat 130 154 IPR002885 -
Sto3g1577 657 Pfam PPR repeat family 332 380 IPR002885 -
Sto3g1577 657 Pfam PPR repeat family 472 520 IPR002885 -
Sto3g1577 657 Pfam PPR repeat family 403 451 IPR002885 -
Sto3g1577 657 Pfam PPR repeat family 228 276 IPR002885 -
Sto3g1577 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Sto3g1577 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Sto3g1577 657 Pfam PPR repeat 189 220 IPR002885 -
Sto3g1577 657 Pfam PPR repeat 294 325 IPR002885 -
Sto3g1577 657 Pfam PPR repeat 550 580 IPR002885 -
Sto3g1577 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Sto3g1577 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Sto3g1577 657 Gene3D Tetratricopeptide repeat domain 540 657 IPR011990 GO:0005515
Sto3g1577 657 SUPERFAMILY HCP-like 207 504 - -
Sto3g1577 657 PANTHER OSJNBA0060P14.6 PROTEIN 24 639 - -
Sto3g1577 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Sto3g1577 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1577 210 657 Glycosyltransferase AT1G05670 29.911 5.97e-70 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1577 - - qsu:111986403 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1577 3 11701419 11703392 Sto3g1577 3 11701419 11703392 ECH