LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto3g1531	ATGGACTCGGTCCAAATCCTTCCTCCACCCTCTGACCTCTCTCCCTCCGCACTTTCTTTCCTCAATGCCAAATTTCACACCAAAGACACTCTCGCCGAAGCGACGACTTTGGTCTCCGAGCTCCAAACTCAGTGCTCTGATTTAGATCAAGCTTTAATCCAATTGAATCGGAGACTAGGAGCGGGTCTTGTAGCTTATGCTTCCTTCTCTGGTCGAATCCATGATCTATTCGATGATGTCAATGCCAAATTGAACGCTCTTACGTCCACCTGCTCCTCTAGTATTATATCAGATGGAACAGGAGGAGAGAAGAATTTCAGAGAGGAGCTTCCGACCTTGGCGAAGGAAGTGGCGCGGTTGGAGACTGTTCGTGTCTATGCAGAGACGGCACTAAAACTTGATACTTTGGTTGGTGATCTTGAGGATGCTGTATCATATACTATGAACAAAAACCTAAGGAAGAACTCTTCTACAAAGAATTCAGAAGAAATGCGTCTGCTTGCTATCAAAACACTTAAAATGACAGAAGAAATAGTGACTGCGATTACAAAGAAGCACCCTCAGTGGAAGCATCTGGTATCAGCAGTTGATCATAGAGTAGATAGAGCTCTAGCCATTTTAAGACCTCAGGCAATTGCTGACCATAGGGCCCTTCTTGCTTCCCTTGGATGGCCCccacctctttcttctttgaccTCAGATGCAAGGAGTGCAAATAAAGTCTTGAATCCTCTGTTGAGTATGCAAGCAGATCTCAAACTCAAGTACTCCGATAATTTTCTTGCCTTGTGCAGTCTACAGGAGTTGCAAAGACAAAGGAAAGTTAGGCAGCTTGAGGGTCATGATCGGGAAGTTGCTCTGCACCAACCACTTTGGCCATTGGTTGATGAAGCAAAGCTAGTTGGGTATAGTTGCAGAGAAGAATGGATCTCAGGAATGGTAACGTCCTTATCAACATACTTGGCAAAAGAAATATTCCCCGTTTATGTTAACCAACTAGATGAGGAGAGTGCTACAGGTACACAATCAACTGCTAGGATTTCATGGTTGCATCTTATTGACTTGATGATATCTTTCGATAAAAAGATAAAGTCTTTGGTAGAGCATTCTGGGATCTTGTTGTCCTTTGAAGAGGATGGGATGCTGCAAAAAATTTCTTCTCTATCTGTATTTTGTGATCGGCCAGATTGGCTTGATCTATGGGCAGAAATAGAGCTCAATGATGCCCTAGATAAGTTAAAATCTGACACAGATGACGAGAAAAACTGGAGAAAGAAAGTCGAAGGTGTAGTTCTGTCATCATGTACTGATGATCACAAATCTCCTCTGGTTTCCAATACCTATCTTCGGCATCTAGCATCTGTAATAGATCGCTCTAGATCATTGCCTAGTGTAATTTTGAGGTCAAGATTTCTCAGATTAGCAGCTGTGCCTattataagaaaattttttgattGCATACTTATTCGATGCCAGGAAGCTGAAGGATTAACTGCCTTAGCTGATGATGATGCTTTAATCAAAGTGGCAATTTCCATCAATGCTGCTCAATTCTTTGAATCTGTTTTAAAGGAATGGTGTGAGGATGTCTTTTTCCTTGAGATGGGGATGGATCAGGATGATAAAGTGGAATtgtcaattaattcaaatagaGACAGTGAAGAATTGTCAGAGAGTCCTCAGATGGGCATCTTTGACGAGGACATAAAAAGGTTGGAGGAGTTTAGAATAGAGTGGGTTGAAAAGATATCTGTAGTTATTATGAGAGGATTTGATGCTCGTTCTCGGGATTATTTGAAGAACCGAAGGCAATGGCAAAACAATGAAGATGGCTGGACTATATCTAAGACTCTAATTGAGGCCCTGGATTATCTGCAAGCTAAAATGTCAGTGGTAGAAAAAAGTTTGAATAGTAGGGATTTTGTTGGGGTCTGGAGAAGTTTGGCCGCTGGAATAGATCGATTAATTTTTACCGGTATACTTGTTAGCAATGTCAAATTTCACAATGGTGGTGTTGAAAGGTTTGGTAATGATTTGAATGTTCTATTTGGTGTATTTGGGGCATGGTGTTTGAGGCCAGAAGGCTTCTTCCCAAAAACGAGTGAAGGTCTTAAGTTGTTAAAGATGGATGAAAGCAAAGTGGAAGAATGTTCAGGAGGGGGGAAGAGTTGGTTGAGGGAGAATGGGATTAGGCATTTGAGTGTAATTGAGGCAGAAAAGATCATGAAGAGCAGAGTGTTCACGAGTTGA	2250	0.4098	MDSVQILPPPSDLSPSALSFLNAKFHTKDTLAEATTLVSELQTQCSDLDQALIQLNRRLGAGLVAYASFSGRIHDLFDDVNAKLNALTSTCSSSIISDGTGGEKNFREELPTLAKEVARLETVRVYAETALKLDTLVGDLEDAVSYTMNKNLRKNSSTKNSEEMRLLAIKTLKMTEEIVTAITKKHPQWKHLVSAVDHRVDRALAILRPQAIADHRALLASLGWPPPLSSLTSDARSANKVLNPLLSMQADLKLKYSDNFLALCSLQELQRQRKVRQLEGHDREVALHQPLWPLVDEAKLVGYSCREEWISGMVTSLSTYLAKEIFPVYVNQLDEESATGTQSTARISWLHLIDLMISFDKKIKSLVEHSGILLSFEEDGMLQKISSLSVFCDRPDWLDLWAEIELNDALDKLKSDTDDEKNWRKKVEGVVLSSCTDDHKSPLVSNTYLRHLASVIDRSRSLPSVILRSRFLRLAAVPIIRKFFDCILIRCQEAEGLTALADDDALIKVAISINAAQFFESVLKEWCEDVFFLEMGMDQDDKVELSINSNRDSEELSESPQMGIFDEDIKRLEEFRIEWVEKISVVIMRGFDARSRDYLKNRRQWQNNEDGWTISKTLIEALDYLQAKMSVVEKSLNSRDFVGVWRSLAAGIDRLIFTGILVSNVKFHNGGVERFGNDLNVLFGVFGAWCLRPEGFFPKTSEGLKLLKMDESKVEECSGGGKSWLRENGIRHLSVIEAEKIMKSRVFTS	749

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto3g1531	749	Pfam	RINT-1 / TIP-1 family	350	743	IPR007528	GO:0006888\|GO:0006890\|GO:0070939
	Sto3g1531	749	ProSiteProfiles	RINT1/TIP20 domain profile.	203	292	IPR007528	GO:0006888\|GO:0006890\|GO:0070939
	Sto3g1531	749	PANTHER	RINT1-LIKE PROTEIN MAG2	293	748	-	-
	Sto3g1531	749	PANTHER	RINT1-LIKE PROTEIN MAG2	1	292	-	-
	Sto3g1531	749	PANTHER	RAD50-INTERACTING PROTEIN 1 RINT-1	293	748	IPR007528	GO:0006888\|GO:0006890\|GO:0070939
	Sto3g1531	749	PANTHER	RAD50-INTERACTING PROTEIN 1 RINT-1	1	292	IPR007528	GO:0006888\|GO:0006890\|GO:0070939
	Sto3g1531	749	Coils	Coil	31	58	-	-
	Sto3g1531	749	Gene3D	Dsl1p vesicle tethering complex, Tip20p subunit, domain D	564	688	IPR042044	-
	Sto3g1531	749	ProSiteProfiles	RINT1/TIP20 domain profile.	293	749	IPR007528	GO:0006888\|GO:0006890\|GO:0070939

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto3g1531	Sto-Chr3	11330955	11335370	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto3g1531	K20474		-	gmx:100793116	1123.61

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto3g1531	3	11330955	11335370	Sto3g1531	3	11330955	11335370	ECH