Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1518 ATGTCGACTCCAGCTAGGAAGAGACTGATGAGAGATTTTAAGAGGCTGCAACAAGACCCACCAGCAGGAATCAGTGGTGCGCCTCAGGACAACAATATAATGCTCTGGAATGCTGTAATATTTGGTCCTGATGATACTCCttgggatggagCCTTCTGCTCCTTGGAAATACTTTGGAATCTTCATAGATGTCAAGGCACGTTTAAGTTGACACTCCAATTTTCGGAGGATTATCCAAACAAACCACCAATGGTGCGATTTGTCTCTCGAATGTTTCATCCTAATATTTATGCAGATGGGAGTATTTGCTTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACATCAATCCAGgattgggagaggcataagatagatcgaatcgtaagattggatcgaggatctactttcctttactctataTCACTGCTCTGTGATCCCAACCCAAATTCTCCAGCAAACTCCGAAGCTGCTCGGATGTTCAGTGAGAACAAGCGTGATTACAATAGGAAAGTGAGGGAAATTGTGGAGCAGAGCTGGACAGCTGACTAA 573 0.3717 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGAFCSLEILWNLHRCQGTFKLTLQFSEDYPNKPPMVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQDWERHKIDRIVRLDRGSTFLYSISLLCDPNPNSPANSEAARMFSENKRDYNRKVREIVEQSWTAD 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1518 190 Gene3D Ubiquitin Conjugating Enzyme 1 186 IPR016135 -
Sto3g1518 190 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 188 IPR000608 -
Sto3g1518 190 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 146 190 - -
Sto3g1518 190 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 126 - -
Sto3g1518 190 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 126 - -
Sto3g1518 190 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 146 190 - -
Sto3g1518 190 SUPERFAMILY UBC-like 4 187 IPR016135 -
Sto3g1518 190 Pfam Ubiquitin-conjugating enzyme 65 126 IPR000608 -
Sto3g1518 190 Pfam Ubiquitin-conjugating enzyme 8 57 IPR000608 -
Sto3g1518 190 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 92 107 IPR023313 -
Sto3g1518 190 SMART ubc_7 7 188 - -
Sto3g1518 190 CDD UBCc 7 183 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1518 Sto-Chr3 11211930 11217120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1518 7 124 Miscellaneous Gene Families AT1G17280 27.642 5.23e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1518 K10573 - atr:18421528 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1518 3 11211930 11217120 Sto3g1518 3 11211930 11217120 ECH