Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto3g1476 | ATGGTTTCTGATTCAATCACAACCGCTCCTATTCCTTCGGCCGCGAACGCCAAGAATTTGGGCAAGAAGAAGAGGACCAACAGGACCGCGAAATTAAAGCAATGTAAGATTGATGCTCGTCGCGAGCAGTGGCTTTCTCAAGTTGCGGTCAAGAATAAGGGATGCAAGGACGGAGGGGACGATGGTCACGCGCCATCGATGTCTGATGTGAAAGACAGCAAACGTTCGTGGGAGAAATTGGAGATGAGGCCTAGAGGTGAAGAGAATGACGGATCGATGCATCGAGATGGCTACTTAGAATCTCCATCCAACAGTCCCACCAGTGTTGATAGTAGCATGTTGAGCGCGGATGCTTTAGCCGCCGATGACAAGCATCAAAATCCGTGTTCAGAGTTGCCCTCTACACATGAACCTGCAGTGCAAATGGTTTCGCCTCGTGAAATGAGCCGTGGGTCGAATTTAGGAGCGCGGAATTCCAAAACTGAGAGCGATAGGTTAGTTCCGTGGGTCTCTAGCAATACCCGAGCTTGGAGACCTGATGATGCTTTTCGTCCTCAGAGTCTGCCCAATCTGTCTAAGCAGCACAGTTTACCAAATCCCGACCGGCGCTTTGGAGGGGTCCCTTGGGCTTTTCCTGCTGCCCCATCCCCGTGTCCAATATGCTGTGAAGATCTTGATTTGACAGACTCAAGTTTTTTACCTTGTTTGTGTGGATTCCGGCTTTGCCTCTTTTGTCACAAGAGGATTGTTGAGGAGGATGGCCGCTGTCCTGGGTGCAGGAAACCATATGAGCGCAAATCTGTTGAGCCAGAGGCAAGCGTCCCTGTAGACAGCCTGACTCTCCGTTTGGCCCGCTCGTGTAGCATGGTTTAA | 873 | 0.5086 | MVSDSITTAPIPSAANAKNLGKKKRTNRTAKLKQCKIDARREQWLSQVAVKNKGCKDGGDDGHAPSMSDVKDSKRSWEKLEMRPRGEENDGSMHRDGYLESPSNSPTSVDSSMLSADALAADDKHQNPCSELPSTHEPAVQMVSPREMSRGSNLGARNSKTESDRLVPWVSSNTRAWRPDDAFRPQSLPNLSKQHSLPNPDRRFGGVPWAFPAAPSPCPICCEDLDLTDSSFLPCLCGFRLCLFCHKRIVEEDGRCPGCRKPYERKSVEPEASVPVDSLTLRLARSCSMV | 290 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto3g1476 | 290 | MobiDBLite | consensus disorder prediction | 121 | 140 | - | - | |
| Sto3g1476 | 290 | PANTHER | CCR4-NOT TRANSCRIPTION COMPLEX RELATED | 115 | 289 | IPR039780 | GO:0004842|GO:0030014 | |
| Sto3g1476 | 290 | PANTHER | CCR4-NOT TRANSCRIPTION COMPLEX RELATED | 8 | 108 | IPR039780 | GO:0004842|GO:0030014 | |
| Sto3g1476 | 290 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 115 | 289 | - | - | |
| Sto3g1476 | 290 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 8 | 108 | - | - | |
| Sto3g1476 | 290 | ProSiteProfiles | Zinc finger RING-type profile. | 218 | 260 | IPR001841 | - | |
| Sto3g1476 | 290 | MobiDBLite | consensus disorder prediction | 50 | 112 | - | - | |
| Sto3g1476 | 290 | MobiDBLite | consensus disorder prediction | 145 | 165 | - | - | |
| Sto3g1476 | 290 | SUPERFAMILY | RING/U-box | 216 | 269 | - | - | |
| Sto3g1476 | 290 | CDD | mRING-HC-C4C4_CNOT4 | 218 | 261 | IPR039515 | - | |
| Sto3g1476 | 290 | MobiDBLite | consensus disorder prediction | 178 | 199 | - | - | |
| Sto3g1476 | 290 | MobiDBLite | consensus disorder prediction | 98 | 112 | - | - | |
| Sto3g1476 | 290 | MobiDBLite | consensus disorder prediction | 146 | 165 | - | - | |
| Sto3g1476 | 290 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 213 | 276 | IPR013083 | - | |
| Sto3g1476 | 290 | MobiDBLite | consensus disorder prediction | 54 | 95 | - | - | |
| Sto3g1476 | 290 | Pfam | RING/Ubox like zinc-binding domain | 218 | 264 | - | - | |
| Sto3g1476 | 290 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto3g1476 | Sto-Chr3 | 10842543 | 10843810 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto3g1476 | - | - | gmx:100792365 | 354.755 |
Event-related genes