Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1441 ATGATGAGTGATTATAATGTGGAGACAGTAAATGATGGACTCAATGAATTCAATGTGGAGTTTCATGGCCCAAAAGAAAGCCTTTACGAAGGTGGAGTCTGGAAAATTCGTGTTGAGCTTCCTGATGCTTATCCATACAAATCCCCTTCTATTGGTTTTGTGAACAAGATATTCCACCCAAATGTTGATGAGCTATCTGGCTCTGTATGCTTGGATGTTATTAACCAATCATGGAGCCCAATGTTtgtataCATGACCGTGCTTTTGTTTTGGTTTCCAGATCTTCTAAACGTCTTTGAAGTTTTTCTTCCACAACTCTTGCTTTATCCAAATCCTTCAGATCCTCTGAATGGTGATGCAGCATCATTAATGATGAAGGATCGAAAGCTGTATGatcaaaaagttaaagAGTATTGTGATAGGTATGCAAAGAAGGAGAACATAAGCAACTCAACAGCTGATGAAGATAGTGGAGATGAGGATGATATCAGCGAAGAGGAAAGTGGATCAAGTGATGATGAAATTCCTGGCCATGCAGATCCCTGA 546 0.3864 MMSDYNVETVNDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFVYMTVLLFWFPDLLNVFEVFLPQLLLYPNPSDPLNGDAASLMMKDRKLYDQKVKEYCDRYAKKENISNSTADEDSGDEDDISEEESGSSDDEIPGHADP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1441 181 SMART ubc_7 1 144 - -
Sto3g1441 181 Pfam Ubiquitin-conjugating enzyme 4 138 IPR000608 -
Sto3g1441 181 MobiDBLite consensus disorder prediction 147 181 - -
Sto3g1441 181 MobiDBLite consensus disorder prediction 153 170 - -
Sto3g1441 181 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 58 74 IPR023313 -
Sto3g1441 181 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 1 181 - -
Sto3g1441 181 SUPERFAMILY UBC-like 4 146 IPR016135 -
Sto3g1441 181 Gene3D Ubiquitin Conjugating Enzyme 1 158 IPR016135 -
Sto3g1441 181 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 144 IPR000608 -
Sto3g1441 181 CDD UBCc 1 139 IPR000608 -
Sto3g1441 181 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1441 Sto-Chr3 10562391 10564037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1441 10 89 Miscellaneous Gene Families AT3G17000 28.571 2.49e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1441 K10576 - gmx:100790685 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1441 3 10562391 10564037 Sto3g1441 3 10562391 10564037 ECH