Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1408 ATGGTTGAAGGGGACAACACCTATCCTGTGTTCCCCTCTTTTCTGGAGGGAAACAGATTGCAGTATGATAATGATGGACTGCCTAAGCTGCAGGTATTTGGGAACTTTCCAGTTGGGTGCAGCGTTGGTTCCTTAAACTATGCCGGAGAGGAGCGTAATCCGGTGATGGAAACAATGAAAGGAGGAGGTATGGAGGTAGTAGGATCTTTAACTAGCCAGCTAAAGCATCCGGTATTACTAAATAACAAGTCTTTTCAAGATAAAGTCGGTCATTCTGGATATGCCCTGAATGCGGTTTCTACTGGTCTGAGGCTATCATATGAGGAAGATGAGCACCATTCTTCTGTCAGTTGTGCAAGTGAAGGCATCAAAGCTTCCCTTCCTATAATTTCATCCCTTGGTGATAATCTTAAGGTTGAGATTGATCAACAGAAAAAAGAGCTCGACTGTTTTATCAAGTTTCAGGAGGAAAGCATCATCAAAGGTCTGAGAGAACTGAAGCAAAAACACATGATCTCCTTTCTGAGTGCCATTGAGAAGGGAGTTAGCAGGAAGTTGTATGAAAAAGAGCTAGAAATAGAGAGCATGAATCACAAGAACAAAGAACTATTAGAAAGGGTGAAGCAGGTTAGCATGGAAGTTCAATCCTGGCACTACAGGGCGAAATACAGTGAATCTGTCGTTAATGTCCTGAGGAACAACTTACAGCAAGTCATGGCACAAGGTGTTATGCATGGAAAAAAAACTTGTGACAGTGAAATAGAGGATGTGGCCTCATGTACGAATGTAAATTATCTTGGAATTACAGAGCATGATGCAGATTTGGAAtccttgaagaagaagaagcaagtaAATTGCAGGGCTTGCAATGTGAAGGAAATATCTGTTCTAATGTTGCCATGTAGACACTTGTGTCTGTGTAAGGATTGTGAAGTATTTATTGATGTTTGCCCTATCTGTGGGATGAAGAAGACTGCGAGCGTTGAAGTATTTATGTCGTAG 1002 0.4072 MVEGDNTYPVFPSFLEGNRLQYDNDGLPKLQVFGNFPVGCSVGSLNYAGEERNPVMETMKGGGMEVVGSLTSQLKHPVLLNNKSFQDKVGHSGYALNAVSTGLRLSYEEDEHHSSVSCASEGIKASLPIISSLGDNLKVEIDQQKKELDCFIKFQEESIIKGLRELKQKHMISFLSAIEKGVSRKLYEKELEIESMNHKNKELLERVKQVSMEVQSWHYRAKYSESVVNVLRNNLQQVMAQGVMHGKKTCDSEIEDVASCTNVNYLGITEHDADLESLKKKKQVNCRACNVKEISVLMLPCRHLCLCKDCEVFIDVCPICGMKKTASVEVFMS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1408 333 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 5 332 IPR017066 -
Sto3g1408 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 333 IPR013083 -
Sto3g1408 333 Pfam Zinc finger, C3HC4 type (RING finger) 284 323 - -
Sto3g1408 333 Coils Coil 186 213 - -
Sto3g1408 333 ProSiteProfiles Zinc finger RING-type profile. 286 320 IPR001841 -
Sto3g1408 333 PIRSF SBP1_RNase_bind 7 333 IPR017066 -
Sto3g1408 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BOI-LIKE 5 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1408 Sto-Chr3 10288445 10290235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1408 286 333 Miscellaneous Gene Families AT4G39050 39.583 3.53e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1408 K19042 - qsu:112040841 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1408 3 10288445 10290235 Sto3g1408 3 10288445 10290235 ECH