Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1390 ATGGCGAGCCTTCCCCGAAGCATAATGGGGGGATTTTCCAGGATCGGAAGACGAAGAAACCATTCTCTACCGTCGGATTTCCAACCGCAGCATTTTCAGGCGTTGGATCATCACCATCACCCGGAGGAGTGGGCTTTTCTAGACACCTTCGAGCGGCAATACGGCACCGTTCATCCTTTCTTCTACGCGTGTCGTTTAAAGGAGGCCCTGAAGCTAGcagaggaggacaagaagttgGTGTTCATGTATCTTCATTCCCCAGAACACCCTTATGCCCGAAGCTTCTGTAACGAAACGCTGCGTTCGGAGGTGGTGAGGCAGTTTCTTGATGTGAATTTTGTTTGCTGGGGAGGTGTTGCTGATGGAGGAGAGGGCTTGAAGATGGTGGCTACTCTGCGTCCTCCTACTTTCCCCTTTTGTGCTGTTATAGCCCCTTCTAGTGATGGTTCCTTAACACTATTGCAACAGATAGAAGGACCAGTTTCAGCAAGTGAGCTAGTGGAGATTCTACAAAGAACAATGGAAGAGCAAGGATTGGCTTTTGGAAGTACCAAATCTAAGCAAGAAGAAGAGTTCAGAGCTAAGCAAGAAGAGAAGATCAGAGCAGATCGTAGGGTAAGAGAAGAACAAGATGCTGCTTATCTTGCAGCTTTACAAATAGACAAGGAAAAAGAGAAAGTGAGGAATTCACCTTCAAAAGTTGAGAAACCAGTAGATGCAAAGAATGCGAGAAATTATGAGAAGCTGAAGATGAACGAATCTGCAACCACAACTACAAAATATCAAAACAAGGCAGTTCCAAAACCAAAAGGAGGAGACCACACTCAGATATTGATAAGGTTTCCAAACGGAGAAAGAAGAGAGCAAAGTTTTGAGTGTAGAGACAAAGTGCAGTCCATTTTCTCATACATTGATTCACTGGGTATTGCTGGGATTGGAAACTACAGATTAGTGTCAAATTTCCCAAGAAAAGTGTACGGCGTTGATCAAATGAGAATCACTCTCAAAGATGCGGGCTTGTATCCCAAAGCTAGCCTTTTCTTGGAGCCCATGCCCATGTGA 1062 0.4416 MASLPRSIMGGFSRIGRRRNHSLPSDFQPQHFQALDHHHHPEEWAFLDTFERQYGTVHPFFYACRLKEALKLAEEDKKLVFMYLHSPEHPYARSFCNETLRSEVVRQFLDVNFVCWGGVADGGEGLKMVATLRPPTFPFCAVIAPSSDGSLTLLQQIEGPVSASELVEILQRTMEEQGLAFGSTKSKQEEEFRAKQEEKIRADRRVREEQDAAYLAALQIDKEKEKVRNSPSKVEKPVDAKNARNYEKLKMNESATTTTKYQNKAVPKPKGGDHTQILIRFPNGERREQSFECRDKVQSIFSYIDSLGIAGIGNYRLVSNFPRKVYGVDQMRITLKDAGLYPKASLFLEPMPM 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1390 353 CDD UBX 277 349 - -
Sto3g1390 353 SUPERFAMILY Ubiquitin-like 268 350 IPR029071 -
Sto3g1390 353 ProSiteProfiles UBX domain profile. 270 348 IPR001012 GO:0005515
Sto3g1390 353 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 1 350 - -
Sto3g1390 353 SMART ubx_3 267 350 IPR001012 GO:0005515
Sto3g1390 353 PANTHER FAS-ASSOCIATED PROTEIN 1 350 - -
Sto3g1390 353 Coils Coil 185 205 - -
Sto3g1390 353 Gene3D - 274 351 - -
Sto3g1390 353 Pfam UBX domain 272 349 IPR001012 GO:0005515
Sto3g1390 353 Gene3D Glutaredoxin 42 179 - -
Sto3g1390 353 SUPERFAMILY Thioredoxin-like 40 179 IPR036249 -
Sto3g1390 353 SMART 45neu3 45 171 IPR006577 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1390 Sto-Chr3 10153328 10156174 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1390 K18726 - tcc:18603973 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1390 3 10153328 10156174 Sto3g1390 3 10153328 10156174 ECH