Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1379 ATGTTGATTCGTTTTCACTTACTCCACTCCGAACTCTGCAAGATTGGGAAATCCCTGAAGAGGGTCAAGCAATTGCATGCTTTGTTGATCAAGAATTGCCTCTCGGAAGACCCGTTTTACGCAACTCAAATCATTAGGCTGTATGCAGCTAGTGGCCACGTTAACTATGCCCACCACGTGTTTGACAGAATTCCCACAAGAACAGTCTACCTTTGGAATTCCTTGATTCGAGCTTACGCTCAAGCCCAAAGGTTTCGCAATGCATTTTCTCTCTTTAATAACATGCTTACAACTAATGTTAGACCTGACAATTTCACTTATGCTTGTGTAGTACGTGCATGCTCTGAGAATTTTGACTCAGCTAGACTGAGACTTGTTCATGGAAAGGCTGTAGTTTCTGGGTTAGGATTGGACTCTATTTGTTGCAGTGCACTCGTGACAGCTTATTCTAAACTAGGTCTAGTTAATGAAGCGAGTGTAGTGTTTTATGGGATTTCTGAACCGGATTTGGTTCTGTGGAATTCATTGATTTCTGGTTATGGGTATTCTGGTTTCTGGGATAAAGGGATGCAAATATTTAACGCAATGCAACGTGCTGGGAAGAGGCCAGATGGTTATACAATAGTTGGGTTGCTTTTAAGCGTTGCAGATTCAAGCTTGCTGAGCATTGGCCGTGGAACACATGGTTTAAGTCTGAAGAGTGGGCTTGATATCAATGCTCATGTAGTTAGTTTGCTGGTGAGCATGTACTCGAGGTGTGAGTGCATGACTTCAGCTTATAAGGTCTTTTGCAGTATATTCCAACCGGATTTAGTTACATGGTCTGCTCTCATAGCTGGATATTCTCAGACTGGAGATTATGTGAGGGCACTGCTCTTTTTCAGGAAATTGCATATGGAAGGCAAGAAGGCAGATACTGTTTTAATTTCCAGTGTATTGGCTTCTATTGCTCAGTTGGCAAACGTAGGGCTTGGACGTGAGATACATGGTTATGTCCTTAGACATGGATTGGAATCAGATGTCATGGTCTCATCTGCTCTTGTAGATATGTACTCGAAGTGTGGCTTCTTGCACTTGGGGATTTCTGTTTTTGAATCAATGACAAAACAGAATGTGATTTCTTATAATTCAGTAATTTCAGGTCTTGGCTTGCATGGATGTGCCTATGATGCTTTCAGGATGTTTGATAGGATGCTGAAGAAAGGAGTAGTACCTGATGAATCTACTTTCTCTGCTCTCCTTTGTGCTTGTTGTCATGCTGGCCTAGTCCAAGTTGGTCGGGAAATTTTCATGAGGATGAAAGATGAATTTGGCGTTGAAGCTAGACCTGAACACTATGTTTATATGGTGAAACTTCTTGGTGGTGCAGGTGAGTTGGAAGAGGCTTACAACCTCACTCAGTCCTTACCAGAACCAGTGGACAAAGGCATATTGGGTGCTCTCTTGTCATGCTGTAATTCTTGTGGGAAGTCTGAGCTGGCAGAAATTGTAGCTCAGCGGCTCTTTGAGAGTGATCCAGATGATAGAGTTTACAGGGTTATGCTTTCTAATATATATGCTGGCGATGGTAGGTGGGATGATGTCAAGAAAATAAGGGACAACATAACAGGTGGTCTGAGGAAATTTCCTGGACTAAGCTGGATCGAAGGCCATTTTTGCTAA 1662 0.4254 MLIRFHLLHSELCKIGKSLKRVKQLHALLIKNCLSEDPFYATQIIRLYAASGHVNYAHHVFDRIPTRTVYLWNSLIRAYAQAQRFRNAFSLFNNMLTTNVRPDNFTYACVVRACSENFDSARLRLVHGKAVVSGLGLDSICCSALVTAYSKLGLVNEASVVFYGISEPDLVLWNSLISGYGYSGFWDKGMQIFNAMQRAGKRPDGYTIVGLLLSVADSSLLSIGRGTHGLSLKSGLDINAHVVSLLVSMYSRCECMTSAYKVFCSIFQPDLVTWSALIAGYSQTGDYVRALLFFRKLHMEGKKADTVLISSVLASIAQLANVGLGREIHGYVLRHGLESDVMVSSALVDMYSKCGFLHLGISVFESMTKQNVISYNSVISGLGLHGCAYDAFRMFDRMLKKGVVPDESTFSALLCACCHAGLVQVGREIFMRMKDEFGVEARPEHYVYMVKLLGGAGELEEAYNLTQSLPEPVDKGILGALLSCCNSCGKSELAEIVAQRLFESDPDDRVYRVMLSNIYAGDGRWDDVKKIRDNITGGLRKFPGLSWIEGHFC 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1379 553 Pfam E motif 491 549 IPR046848 -
Sto3g1379 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Sto3g1379 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Sto3g1379 553 PANTHER OS01G0545900 PROTEIN 6 549 - -
Sto3g1379 553 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 549 - -
Sto3g1379 553 Gene3D Tetratricopeptide repeat domain 371 552 IPR011990 GO:0005515
Sto3g1379 553 Gene3D Tetratricopeptide repeat domain 5 125 IPR011990 GO:0005515
Sto3g1379 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 436 IPR002885 -
Sto3g1379 553 Pfam PPR repeat 171 200 IPR002885 -
Sto3g1379 553 Pfam PPR repeat 141 162 IPR002885 -
Sto3g1379 553 Pfam PPR repeat 272 301 IPR002885 -
Sto3g1379 553 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Sto3g1379 553 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Sto3g1379 553 TIGRFAM PPR: pentatricopeptide repeat domain 70 103 IPR002885 -
Sto3g1379 553 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Sto3g1379 553 TIGRFAM PPR: pentatricopeptide repeat domain 409 438 IPR002885 -
Sto3g1379 553 Gene3D Tetratricopeptide repeat domain 126 222 IPR011990 GO:0005515
Sto3g1379 553 Gene3D Tetratricopeptide repeat domain 228 324 IPR011990 GO:0005515
Sto3g1379 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Sto3g1379 553 Pfam PPR repeat family 68 114 IPR002885 -
Sto3g1379 553 Pfam PPR repeat family 371 419 IPR002885 -
Sto3g1379 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1379 Sto-Chr3 10021457 10023118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1379 57 549 Glycoside Hydrolase AT3G49170 29.860 5.81e-71 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1379 - - gmx:100820049 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1379 3 10021457 10023118 Sto3g1379 3 10021457 10023118 ECH