Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1309 aTGGTGGAATTTGAATCAATGGAGAGTGTGAGACTACTATGCCCAAAGCTCTTCCTCCACCGTACAGAATCTGGTCCCGGAATCCACTGGCTCGTCGGATCCCCATTTTTTCCACCATTCACCATCGTCTCCTCCCTCAGATGCATCCACacctccgactccgactccacTTCCCCAGATTTGCGCCAAGAATCAGAAGAACTTCGGACGTTGTTAATTAAAGGATTTGAGATAATCGGAGCTCTAACTTTTGGAAACTCCGATTTGGAGAAAAATGCTCGTAAGTCTATAGATGCTGCTTGTGGATTGAGGAAGCTTCTTTACGGCGAAGAGAAATGGGAAAACCAACCTGTGGTTGGAGCAGTTGCAGGTTTAGATACCAGTAACGTAAGATTTTTCGTCTCCAAGAGTGGAAATGCAACAAGTTTCGAATCTGTTACATCAGTTGTATACGAAGATCATCCAGAGAAGTATGTGTGGGAGAAGGGTTGTTTACTTCGGTGTGAACTTCCACTTAAGTTGCCAGTGTATTACGCTGTAAACAATCCTCGTGATGTTGAGAAAGCATATTCTCGTGCAACTGAAGCTGTTATTACCAAGCTAAGAGACCCACGAGTCGTGTACATGTTAGAGACCTTAAGCAACGCTTCTGTGGATCTACCTCCTCCAGCTATAATCCGAGGTGTACAATTAGACTTCAACACAGATCTCTCCAAGGTCATGCCTTTGACTGTAGATACTATCAAAGTTAGTGTTCTCTTTAACAGCTTAGAAAAATCCTCAACACCTGCTGCACCTGTTGCTGAATATCTCCCAGTCCAGGAAGAATCCAGACTACTTGTGGTGAACATTAAGCTTGATGTAGTCTGCTATGCGGCCAAGGAGCTTCCACTGAGTTATGCAGTTTCAAGTTTAGTCATCCCTGGTCTAGTTGACCAGTTAAATACATTGCAAAATTTGATCTTGCCCAACCTTTTGACACAACATCCTCAGCTACATCCTTATCACTTTAGTCCTCCTGGGGTTTTGCATCCAATTACTGTTTTCTATGAGCTGAGTTTTGGGGAGACAGAATTGAAGCAAGTTGATGTTAGAAGATCCTTACACTCAAGATTAGGATTGCCTTATGATCGTCCCCTTCTGAGAATTTCTAATGCGCTGGACTTTTCAAGATTGAACAGTGGGAATGAGTCCCTACAGAAGGGTTCGACTTTGCTAAGAGATGTACACATTGGAATACCTAGCAGTGGAGTTACTGGTGGGGCCGTTTCCCTTGTACAAGGTTCCTATGAATACCACCATTATCTTCAGAATGGCTATAATGATTCGGGATGGGGTTGTGCTTATCGGTCTCTCCAGACTATTGTCTCATGGTTCAGACTACAGAACTACACATCCATTGAAGTTCCTTCTCATAGGGAAATACAGCAGACACTTGTTGAGATTGGTGATAAGGATCCCTCTTTTGTTGGGTCACGAGAATGGATTGGTGCCATTGAGTTGAGCTTTGTTTTGGACAAACTTCTGGGTGTTACTTGCAAAGTCATCAATGTCAGATCTGGAGCTGAGCTTCCAGAAAAATGTCGAGAGCTGGCATTGCACTTTGAGAACCAAGGAACTCCCGTTATGATTGGCGGTGGTGTACTTGCTTATACACTATTGGGAGTGGATTACAATGAGGCAAGTGGAGATTGCGCATTTTTAATACTTGATCCACACTATACAGGCACGGATGATCACAAGAAAATAGTGAATGCAGGGTGGTGTGGGTGGAAAAAGGCTGTGGATAACAAGGGGAAAAATTTCTTCTTGCACGATAAATTTTATAATCTCCTGCTGCCTCAGAGGCCTAACATGTGTATACATCAAGCATTATACCAATTACCGAGTACAAATATCTATTGGGAAGATAATCTTTCTGAAGCCATGGCTCTAATACACCATCAATTCCTTCATTCTTCAATCTTCACACATCGTCCCAATTCATCCCATACTTTTTCAAAACCCTACGTATTGGTGCactctaaaaccccaaatttcctCCCTGTATCCGCTGCACTACCAATCAATGTCTCTCAGTCTTCAACTCCCATTTTTCTCCCATTCcttgaacaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaatagaagCCGTGGCAGAGCACGAACAAGCGGATGACCCTGACGATCCAATTTACAAATTCTTCAAGTCTCGCGCATCAACTTCTAGCCAGGACCCTCAACACGAAGGAAAACTGACTCTACAGAAGAACCGTCGCGTTTCTTGGCATCTTGCTTCGGATGCCGAGTCTCTTGATGAAGAAACCGAAGTCAATTTGGATGCCAAATCCCTAATTCTTGACGAGCAGGAAGAGGTAGGGGACCCGAAGGCGTTGCCTGAGGGCATTGTTGGGGAGATTGTTCAAATTGCGAGGAATTTACCAGAAAATTTGACATTGGGAGAGGCTTTGAGTGGTTATGAAGGACGTGTTGGCGAGACAGAGTGCTTGGAGGTGTTAGGGTTTCTTGGGGAGGAGGGTCGTCTATTGGATTGTTTGTATCTCTTTGAGTGGATGAGATTGCAGGAACCATCTCTTGTTACGCCTCGGGCATGTACTATATTGTTCCCAGTGTTGGGAAGAGCAAGGAAGGGTGATAAGTTGATGGTTTTGTTTAGAAACTTGCCTTCCAGCAAGGAGTTCAGAGATGTTCATGTTTATAATGCTGCAATTTCAGGCCTTCTTTATAGTGGAAGGTATGAAGATGCTTGGAAGGTGTACGAGTCAATGGAACAAGATAATATTTGTCCAGATCACGTGACATGCTCTATTGTGATTACAATAATGAGAAAACTTGGCCACAGTGCAAAAGATGCGTGGCAATTTTTTGAGAAGATGAACAGAAAAGGAGTCAAATGGAGAGAAGAAGTCTTGGGTGCATTAACAAAATCATTCTGTGATGAGGGGTTGATGAAGGAAGCTCTCATCATCCAACTAGAAATGGAGAAAAAAGGAGTGTCTTCAAATGCAATTGTGTACAACACTCTGATGGATGCATTTGTTAAATCCAACCACATAGAAGAAGCTGAAGGCATATTTCTTGAGATGAAAGCTAAAGGGATTAAACCCACTGCAGCAACATTCAACATTTTAATGTACGCATACAGCAGAAGAATGCAGCCTCAGGTTGTGGAGAAGCTGCTGGAAGAAATGGTGGATGCTGGCTTGGAGCCAAATGCCAAATCATATACTTGTCTAATCAGTGCATATGGGAAGCAGAAGAAGATGAGTGACATGGCTGCAGATGCATTCTTGAAGATGAAGAAAGCTGGTATAAAACCCACTTCACATTCTTATACAGCTCTAATCCATGCTTATTCAGTCAGTGGCTGGCATGAGAAAGCTTATCTGGCATTTGAGAACATGCAAAGAGAAGGCATCAAGCCCTCCATAGAAACCTACACTGCTCTACTGGATGCATTTAGGCGTGCTGGTGATACCCAGACATTGATGAAAATATGGAAGTTGATGAcaagagagaaaatagaaggAACACGGGTTACATTCAATATTCTTGTTGATGGATTTGCTAAACAAGGTCACTACGTCGAAGCACGAGACGTAATATCCGAATTCGGTAAGATAGGTTTGCACCCAACAGTGATGACATATAATATGCTGATGAATGCATATGCACGAGGAGGGCAACACTCAAAGCTACCACAGCTGTTGAAGGAGATGGCAGCTCTGAATCTGAAACCTGATTCTGTAACTTATTCAACTATGATATATGCCTATGTTCGTGTTCGAGATTTTAAGAGGGCATTCTTTTATCACAAGAAGATGGTGAAAAGTGGAGAACTCCCTGATCCCAATTCTTACAAGAAGCTTAGGGAGATACTGGATACAAAAGCTGCCATGAAAAACAAGAAGGACAGGAGTGCTATACTAGGAATAGTTAAGAGTAAGATGGGCATGGTTAAAGataagaagaaggggaagaaagATGAATTCTGGAAGTACaagaaaaaatatgttaaaaaacCCAGTTCTGATCATAGTGTGTAA 4086 0.4109 MVEFESMESVRLLCPKLFLHRTESGPGIHWLVGSPFFPPFTIVSSLRCIHTSDSDSTSPDLRQESEELRTLLIKGFEIIGALTFGNSDLEKNARKSIDAACGLRKLLYGEEKWENQPVVGAVAGLDTSNVRFFVSKSGNATSFESVTSVVYEDHPEKYVWEKGCLLRCELPLKLPVYYAVNNPRDVEKAYSRATEAVITKLRDPRVVYMLETLSNASVDLPPPAIIRGVQLDFNTDLSKVMPLTVDTIKVSVLFNSLEKSSTPAAPVAEYLPVQEESRLLVVNIKLDVVCYAAKELPLSYAVSSLVIPGLVDQLNTLQNLILPNLLTQHPQLHPYHFSPPGVLHPITVFYELSFGETELKQVDVRRSLHSRLGLPYDRPLLRISNALDFSRLNSGNESLQKGSTLLRDVHIGIPSSGVTGGAVSLVQGSYEYHHYLQNGYNDSGWGCAYRSLQTIVSWFRLQNYTSIEVPSHREIQQTLVEIGDKDPSFVGSREWIGAIELSFVLDKLLGVTCKVINVRSGAELPEKCRELALHFENQGTPVMIGGGVLAYTLLGVDYNEASGDCAFLILDPHYTGTDDHKKIVNAGWCGWKKAVDNKGKNFFLHDKFYNLLLPQRPNMCIHQALYQLPSTNIYWEDNLSEAMALIHHQFLHSSIFTHRPNSSHTFSKPYVLVHSKTPNFLPVSAALPINVSQSSTPIFLPFLEQEEEEEEEEEEEEEEEEIEAVAEHEQADDPDDPIYKFFKSRASTSSQDPQHEGKLTLQKNRRVSWHLASDAESLDEETEVNLDAKSLILDEQEEVGDPKALPEGIVGEIVQIARNLPENLTLGEALSGYEGRVGETECLEVLGFLGEEGRLLDCLYLFEWMRLQEPSLVTPRACTILFPVLGRARKGDKLMVLFRNLPSSKEFRDVHVYNAAISGLLYSGRYEDAWKVYESMEQDNICPDHVTCSIVITIMRKLGHSAKDAWQFFEKMNRKGVKWREEVLGALTKSFCDEGLMKEALIIQLEMEKKGVSSNAIVYNTLMDAFVKSNHIEEAEGIFLEMKAKGIKPTAATFNILMYAYSRRMQPQVVEKLLEEMVDAGLEPNAKSYTCLISAYGKQKKMSDMAADAFLKMKKAGIKPTSHSYTALIHAYSVSGWHEKAYLAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMTREKIEGTRVTFNILVDGFAKQGHYVEARDVISEFGKIGLHPTVMTYNMLMNAYARGGQHSKLPQLLKEMAALNLKPDSVTYSTMIYAYVRVRDFKRAFFYHKKMVKSGELPDPNSYKKLREILDTKAAMKNKKDRSAILGIVKSKMGMVKDKKKGKKDEFWKYKKKYVKKPSSDHSV 1361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1309 1361 Pfam PPR repeat family 908 953 IPR002885 -
Sto3g1309 1361 Pfam PPR repeat family 1225 1273 IPR002885 -
Sto3g1309 1361 Pfam PPR repeat family 1015 1061 IPR002885 -
Sto3g1309 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1156 1190 IPR002885 -
Sto3g1309 1361 MobiDBLite consensus disorder prediction 704 740 - -
Sto3g1309 1361 Gene3D Tetratricopeptide repeat domain 1079 1185 IPR011990 GO:0005515
Sto3g1309 1361 Pfam Pentatricopeptide repeat domain 1072 1132 IPR002885 -
Sto3g1309 1361 Pfam Pentatricopeptide repeat domain 1145 1200 IPR002885 -
Sto3g1309 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1121 1155 IPR002885 -
Sto3g1309 1361 Gene3D - 403 620 - -
Sto3g1309 1361 Pfam Peptidase family C78 423 612 IPR012462 -
Sto3g1309 1361 PANTHER - 643 1360 - -
Sto3g1309 1361 MobiDBLite consensus disorder prediction 704 730 - -
Sto3g1309 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1261 1295 IPR002885 -
Sto3g1309 1361 TIGRFAM PPR: pentatricopeptide repeat domain 1193 1217 IPR002885 -
Sto3g1309 1361 TIGRFAM PPR: pentatricopeptide repeat domain 1229 1261 IPR002885 -
Sto3g1309 1361 TIGRFAM PPR: pentatricopeptide repeat domain 1159 1189 IPR002885 -
Sto3g1309 1361 TIGRFAM PPR: pentatricopeptide repeat domain 1053 1086 IPR002885 -
Sto3g1309 1361 TIGRFAM PPR: pentatricopeptide repeat domain 1263 1296 IPR002885 -
Sto3g1309 1361 TIGRFAM PPR: pentatricopeptide repeat domain 912 944 IPR002885 -
Sto3g1309 1361 TIGRFAM PPR: pentatricopeptide repeat domain 1123 1156 IPR002885 -
Sto3g1309 1361 TIGRFAM PPR: pentatricopeptide repeat domain 1017 1050 IPR002885 -
Sto3g1309 1361 TIGRFAM PPR: pentatricopeptide repeat domain 1088 1121 IPR002885 -
Sto3g1309 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1226 1260 IPR002885 -
Sto3g1309 1361 PANTHER OS03G0856100 PROTEIN 643 1360 - -
Sto3g1309 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1050 1084 IPR002885 -
Sto3g1309 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1191 1225 IPR002885 -
Sto3g1309 1361 SUPERFAMILY Cysteine proteinases 438 577 IPR038765 -
Sto3g1309 1361 Coils Coil 700 732 - -
Sto3g1309 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 909 943 IPR002885 -
Sto3g1309 1361 Pfam PPR repeat 986 1012 IPR002885 -
Sto3g1309 1361 Gene3D Tetratricopeptide repeat domain 962 1078 IPR011990 GO:0005515
Sto3g1309 1361 Gene3D Tetratricopeptide repeat domain 1202 1323 IPR011990 GO:0005515
Sto3g1309 1361 Gene3D Tetratricopeptide repeat domain 813 961 IPR011990 GO:0005515
Sto3g1309 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 944 979 IPR002885 -
Sto3g1309 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1015 1049 IPR002885 -
Sto3g1309 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1085 1120 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1309 885 1317 Glycosyltransferase AT1G05670 25.173 1.03e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1309 - - ccaj:109799145 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1309 3 9502082 9511802 Sto3g1309 3 9502082 9511802 ECH