Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1298 ATGCGCGTTCACTACCTTCATTATTCCAGAGCGACCATGCTCAAATCTACCTTCACTCCCATTTTCTGCATGCTTGTTCCCAACCCCAAATCTTCGAAACTATCAACTCTACCAATTACCAACACATTCAAAAACTGCCCACCACCTGTTCGACAAAATGCCTCATTGAAAGACCCCGTTAGCATCACCGTCGCTCCACACCTAGCGTACCCTACTTCTGCTTACGTCCACCTCCCTTTTTGCCGCAAGCGCTGCCATTACTGCGACTTCCCAATTGTCGCTCTTGGTTCTGCTTCAACCCAAATCGAAGATGACCCACGAGTGTCGAACTATGTTCAATTTCTGTGCAGAGAAATCGATGCAATGAAGGTGGAATGTGATGCTAAGAAGCCTCTTGAGACGGTGTTTTTTGGCGGAGGGACGCCGTCTCTCGTGCCAGCGAGGTTGGTTTCAAAGGTTTTGGAGGCGCTGAGTTTGAAATTTGGGGTGTGTGAGGATGCTGAGATTTCAATGGAAATGGATCCTGGGACATTTGATGCTAGGAAGATGAAAGAGATGATGGGGTTGGGTGTGAACAGAGTGTCTTTGGGAGTTCAAGCGTTTCAAGAGAAGCTGCTGAGGGCATGTGGGAGAGCACATGGTGTGGAGGAGGTTTATGAGTCTATCGGTATTGTCAAGTCATGTGGGGTTGAAAATTGGAGTATTGATCTTATATCTTCACTGCCTCATCAGACAAATGATATGTGGGAGGAGAGTCTGAGGCTCGCCATTGAGGCACAGCCCACTCATGTTTCAGTATATGATTTGCAGATTGAACAAGGCACAAAATTTGGGACCCTGTATACACCAGGGGAATTGCCCCTTCCTTCTGAGACACAATCAGCAGACTTCTATAAAATGGCTTCAAGAGTGCTTTGTGATGCAGATTACAACCATTACGAAATCAGCAGTTACTGCAAGAGTGGGTATGAGTGCAAACACAATTTTACCTATTGGAAGAACAAGCCTTACTATGGATTTGGCTTAGGCTCAGCAAGCTTTGTTGGCGGTTTAAGGTTTTCAAGACCGAAGAAGGTGAACGATTACATGGGTTTTGTGCAGAGTTTGGAGAATGGATTGGTAAATTGTTCTGGTAATGATCACATTAATGTCAAGGACACAGCCATGGATGTTGTGATGCTGTCCCTGAGAACTGCAAAGGGAATAGACTTGAAGTGTTTCCAAGAGTCATTTGGCAGCTCTATTGTATCCTCTCTTTTGGACATTTATAAACCTTACTTTGAGAGTGGACATGTGGTATGCTTGGATGAGAAGAGAAGGCCCATCAGAATAGAAGATGTCACCACTTCTTCATTTGATGAAAATATCAGAGAAAGAAAGGTGGCCTATATTCGGCTCAATGATCCAGAAGGCTTTCTCTTGTCAAATGAGCTAATATCTCTTGCTTTTGAAGTCATAGATTCTTACAACTTTGGTTCTCCACACCAAGAGGCTGCTTGA 1500 0.446 MRVHYLHYSRATMLKSTFTPIFCMLVPNPKSSKLSTLPITNTFKNCPPPVRQNASLKDPVSITVAPHLAYPTSAYVHLPFCRKRCHYCDFPIVALGSASTQIEDDPRVSNYVQFLCREIDAMKVECDAKKPLETVFFGGGTPSLVPARLVSKVLEALSLKFGVCEDAEISMEMDPGTFDARKMKEMMGLGVNRVSLGVQAFQEKLLRACGRAHGVEEVYESIGIVKSCGVENWSIDLISSLPHQTNDMWEESLRLAIEAQPTHVSVYDLQIEQGTKFGTLYTPGELPLPSETQSADFYKMASRVLCDADYNHYEISSYCKSGYECKHNFTYWKNKPYYGFGLGSASFVGGLRFSRPKKVNDYMGFVQSLENGLVNCSGNDHINVKDTAMDVVMLSLRTAKGIDLKCFQESFGSSIVSSLLDIYKPYFESGHVVCLDEKRRPIRIEDVTTSSFDENIRERKVAYIRLNDPEGFLLSNELISLAFEVIDSYNFGSPHQEAA 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1298 499 SUPERFAMILY Radical SAM enzymes 55 437 - -
Sto3g1298 499 Pfam Radical SAM superfamily 76 255 IPR007197 GO:0003824|GO:0051536
Sto3g1298 499 ProSiteProfiles Radical SAM core domain profile. 66 309 IPR007197 GO:0003824|GO:0051536
Sto3g1298 499 SFLD anaerobic coproporphyrinogen-III oxidase like 71 434 - -
Sto3g1298 499 CDD Radical_SAM 81 222 - -
Sto3g1298 499 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 73 429 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Sto3g1298 499 SFLD HemN-like, clustered with heat shock genes 71 434 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Sto3g1298 499 PANTHER COPROPORPHYRINIGEN III OXIDASE 46 486 IPR034505 -
Sto3g1298 499 Gene3D tm_1862 like domain 79 291 IPR023404 -
Sto3g1298 499 PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL 46 486 - -
Sto3g1298 499 SMART MiaB 71 300 IPR006638 GO:0003824|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1298 - K07739 gmx:100779022 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1298 3 9391495 9393456 Sto3g1298 3 9391495 9393456 ECH