Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0862 ATGGGTGTGTTCAGTGACATAGGAGAATATTCTTCATCAATCTCTGCACCGAGGTTGTTCAAGGCCTTGGTTGTGGATGCTCCCAACCTAATTCCAAACCTTATTCCTCAGATTGTGAAGAGCATTGTCGTCCATGGAGATGGCGGCCCCGGAAGCATCAGACAAATTAATTTCGTCCAAgGAAGCGAATTGACAAGTTTGAAGAACAGGATCGATGAGATAAACGAGGAGAGTCTGACGTTTAATTACACTACCATCGAAGGCGAAATACTAGGAGACAAGTATGAATGCATAGGTTATGAGATTAAGTTTGAGGCAAAGGCAGATGGTGGTAGCATCAATAAGATGACGATCAAGTATTATACCAAAGGTGATTTTGAGGTGAATGAAGAAGAAATCAAGCTTGGGAAGGAAAGGGCCATGGGAATTTACAAAATTGTGGAGGCCTATCTTCTCTCCAACCCTCATGTCTATGCTTGA 480 0.425 MGVFSDIGEYSSSISAPRLFKALVVDAPNLIPNLIPQIVKSIVVHGDGGPGSIRQINFVQGSELTSLKNRIDEINEESLTFNYTTIEGEILGDKYECIGYEIKFEAKADGGSINKMTIKYYTKGDFEVNEEEIKLGKERAMGIYKIVEAYLLSNPHVYA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0862 159 CDD Bet_v1-like 9 151 - -
Sto3g0862 159 PANTHER - 1 159 - -
Sto3g0862 159 SMART Bet_v_1_2 5 154 IPR000916 GO:0006952
Sto3g0862 159 Gene3D - 1 159 IPR023393 -
Sto3g0862 159 Pfam Pathogenesis-related protein Bet v 1 family 11 154 IPR000916 GO:0006952
Sto3g0862 159 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Sto3g0862 159 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Sto3g0862 159 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Sto3g0862 159 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Sto3g0862 159 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Sto3g0862 159 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Sto3g0862 159 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Sto3g0862 159 PANTHER MAJOR ALLERGEN PRU AR 1-LIKE 1 159 - -
Sto3g0862 159 SUPERFAMILY Bet v1-like 9 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0862 Sto-Chr3 5949313 5949906 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0862 - - adu:107483508 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0862 3 5949313 5949906 Sto3g0862 3 5949313 5949906 ECH