Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0843 ATGAAGATCAACGTGAACTCCGTCGCTCGCAAAGTGGAGGTTGACAATCGCATACCCCTCCGTTATTACTATCGGATTGCCGATAACCTCCTCAAACAGGCAAGTATCTACCGAGAAGAGAACAATGTAGTCGACTTGTATATCATACTTCTTAGATATTCAAGTTTGATATCTGAAACCATACCATTTCATCGAGATTACCAAGTTTTACTTCCTAAAGAAAGAGCAGCATATAGGAAGAGACTCCTGGCTGTACTGGATGAGCTTGAATCTCTGAAGCCAGAATTCAAACGCCGGGTCAATGAATTGAATGAGTTACATGGAAATGCTCAATTTCCTAAAGCTAATGACTCCAATAAGGCTTTGCAAAGTTCAGTGGCTTCATCTTTGGAATGGCCTGGCATCAGTAATAGTTCTTACATGAGCATGGATTTTAAACCGCCTGCTGGATCGGGTCCACAGTCTTCAtggaaatataataataatattgctcAAAATTTATCTTCAAATTCCTTGCATATTGACAAGCAGTTTCAGAAACTATCTCTTGGTCTACCACTTCCAAAGAAGGAGACTCTGTCCAGGCACTCGTTTTTGGGACCTAATGGTCTTCGAGGTCAATGGCTTGGACCGAGTGCAGGAATGAAGGTTCAATATCCAAGCAGTAGTGATCTGACTCCTGCTAAGGATACAAGTCTGAATCAGGCTGGAGAATATGATATTGTGGCAGTTAAAGAGAGTGATCCAGGGACAGTCATGTCCACGATGGATTCAGTGCTCTCATTGGATGATGGAAGTTGGCCACGTCCTGCTGACGAGTCCTGTTCTGCGGTAGTGAATGAATCAGGGGAGAGTCCCTTCCAGTTACTCAACATTAATCAACCTTCTCCTCCACCAGTTCTTGCTCAGGTGCACCCGGAATATGCTCCAATTCCTCCTTCAAAAGTTGCAGATCCAAGACCAGGACCACCTAAATCTTCTCATGAGTCTACAGTTGGCCCTTCTACATATCAACACCTACATATTCCCGTCAAAATGTTGGATGATTTTTTGAGATTGGCTCTGGAAAATACGCGGAAGAACTTAGAGACATGTGGTGTTCTTGCTGGGTCCCTGAAAAACAGGGTGTTTCATATTACTACACTTATAATCCCGAAGCAGGAATCAACTTCAGACTCGTGCCAAACATTGAATGAGGAAGAGATATTTGAAGTTCAAGACAGTTTATCACTTTTTCCTCTAGGCTGGATTCATACACACCCATCACAGACTTGTTTTATGTCATCAGTAGATCTTCATACACATTACTCGTACCAGATCATGTTACCAGAGGCAATTGCAATTGTAATGGCCCCTACAGATACAAAAAGTCCACATGGCATATTTCATTTGTCTGATCCAGGTGGTGTGTCAGTAATACGCAACTGTCAGCAACGTGGATTTCATCCCCATGAAGAGCCTTCTGACGGGAGCCCAATTTATGAGCACTGCTCCCATGTATATATGAACGGTAACCTCAAGTTTGATGTTGTTGATCTTCGAGAGAGGTGA 1551 0.4249 MKINVNSVARKVEVDNRIPLRYYYRIADNLLKQASIYREENNVVDLYIILLRYSSLISETIPFHRDYQVLLPKERAAYRKRLLAVLDELESLKPEFKRRVNELNELHGNAQFPKANDSNKALQSSVASSLEWPGISNSSYMSMDFKPPAGSGPQSSWKYNNNIAQNLSSNSLHIDKQFQKLSLGLPLPKKETLSRHSFLGPNGLRGQWLGPSAGMKVQYPSSSDLTPAKDTSLNQAGEYDIVAVKESDPGTVMSTMDSVLSLDDGSWPRPADESCSAVVNESGESPFQLLNINQPSPPPVLAQVHPEYAPIPPSKVADPRPGPPKSSHESTVGPSTYQHLHIPVKMLDDFLRLALENTRKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTKSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNGNLKFDVVDLRER 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0843 516 Gene3D - 3 127 - -
Sto3g0843 516 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 2 514 - -
Sto3g0843 516 Pfam USP8 dimerisation domain 7 99 IPR015063 -
Sto3g0843 516 SUPERFAMILY JAB1/MPN domain 339 470 - -
Sto3g0843 516 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 336 443 IPR000555 GO:0005515|GO:0008233|GO:0008237
Sto3g0843 516 PANTHER AMSH-LIKE PROTEASE 2 514 - -
Sto3g0843 516 SMART pad1_6 339 467 IPR000555 GO:0005515|GO:0008233|GO:0008237
Sto3g0843 516 MobiDBLite consensus disorder prediction 293 335 - -
Sto3g0843 516 MobiDBLite consensus disorder prediction 299 320 - -
Sto3g0843 516 CDD MPN_AMSH_like 337 514 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Sto3g0843 516 Coils Coil 86 106 - -
Sto3g0843 516 Gene3D Cytidine Deaminase, domain 2 324 516 - -
Sto3g0843 516 ProSiteProfiles MPN domain profile. 340 470 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0843 Sto-Chr3 5851952 5858583 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0843 K11866 - gmx:100812784 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0843 3 5851952 5858583 Sto3g0843 3 5851952 5858583 ECH