Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0763 ATGTCTCTGGCTCAGCAATTAACCGCCCTTCGATCTTGCTCTCCGCTTTCTTCTTCGCGTCTTTCCAAACCCTTCGCTCCCAGGCAAACCCACAAGCGCACTTTGCTTCCCATTGTCGCTTCTGTCGCTATCTCCAATGCGCAGACCAAAGAGAGGCTCAAGCTCAAAGAGCTCTTTGAAGAAGCCTACGAGCGCTGTCGCACTGCtcccatggaaggtgtttccTTCACCGTCGAAGACTTCAACTCCGCTTTGGATAAGTATGACTTTGATTCTGAAATTGGGACCAAGGTTAAAGGCACTGTGTTCTGCACAGATTCCAATGGAGCGCTTGTTGATATTACAGCAAAGTCATCAGCATACTTGCCTCTCCAAGAGGCATGTGTCCACAGAATTAAACATGTAGAAGATGCCGGCATAGTTCCTGGTTTGAGAGAGGAGTTTGTaatcattggtgaaaatgaAGCTGATGATAGCTTGATCTTGAGTTTAAGGACTGTCCAGTATGACCTTGCATGGGAACGCTGTAGACAACTTCAAGCAGAAGATGTAGTTGTCAAGGGTAAGATTGTTGGTGCAAACAAAGGTGGAGTGGTGGCTGTGGTGGAAGGCCTTAGAGGGTTTGTTCCCTTCTCACAGATATCATCGAAATCAACTGCTGAAGAGCTTCTTGAGAAGGAGCTTCCTCTAAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTATCCTCAGTAACCGGAAGGCCATGGCTGACAGTCAGGCACAGCTAGGAATTGGATCAGTGGTCACTGGCTCTGTTCAAAGTCTAAAGCCATATGGTGCCTTTATTGACATTGGTGGAATTAATGGTCTTCTTCATGTCAGTCAGATCAGTCATGATCGTGTAGCTGATATTTCAACAGTTCTTCAACCTGGTGATACTCTCAAGGTGATGATCTTAAGTCATGATCGCGAGAGAGGTCGGGTAAGCCTTTCCACAAAGAAGTTAGAACCCACACCAGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCTGAGGAAATGGCTCAGACATTTAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCTGACATGCTTAGGTTCCAGCCTGAGAGTGGATTAACTCTCAACAGTGATGGAATATTGGGACCACTTACTTCAGACTTGCCTGCAGAGGGACTGGATCTAAGTGAGGTGCCCCCAGCTGAAGAATAG 1230 0.4561 MSLAQQLTALRSCSPLSSSRLSKPFAPRQTHKRTLLPIVASVAISNAQTKERLKLKELFEEAYERCRTAPMEGVSFTVEDFNSALDKYDFDSEIGTKVKGTVFCTDSNGALVDITAKSSAYLPLQEACVHRIKHVEDAGIVPGLREEFVIIGENEADDSLILSLRTVQYDLAWERCRQLQAEDVVVKGKIVGANKGGVVAVVEGLRGFVPFSQISSKSTAEELLEKELPLKFVEVDEEQSRLILSNRKAMADSQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLTSDLPAEGLDLSEVPPAEE 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0763 409 Pfam S1 RNA binding domain 181 245 IPR003029 GO:0003676
Sto3g0763 409 Pfam S1 RNA binding domain 259 328 IPR003029 GO:0003676
Sto3g0763 409 SUPERFAMILY Nucleic acid-binding proteins 178 251 IPR012340 -
Sto3g0763 409 ProSiteProfiles S1 domain profile. 183 247 IPR003029 GO:0003676
Sto3g0763 409 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 2 409 - -
Sto3g0763 409 SUPERFAMILY Nucleic acid-binding proteins 259 338 IPR012340 -
Sto3g0763 409 SUPERFAMILY Nucleic acid-binding proteins 90 190 IPR012340 -
Sto3g0763 409 CDD S1_RPS1_repeat_ec1_hs1 95 165 - -
Sto3g0763 409 Gene3D - 176 254 IPR012340 -
Sto3g0763 409 ProSiteProfiles S1 domain profile. 260 328 IPR003029 GO:0003676
Sto3g0763 409 MobiDBLite consensus disorder prediction 384 409 - -
Sto3g0763 409 CDD S1_RPS1_repeat_hs4 260 328 - -
Sto3g0763 409 Coils Coil 345 365 - -
Sto3g0763 409 Gene3D - 78 175 IPR012340 -
Sto3g0763 409 CDD S1_RPS1_repeat_ec2_hs2 183 247 - -
Sto3g0763 409 ProSiteProfiles S1 domain profile. 95 165 IPR003029 GO:0003676
Sto3g0763 409 SMART S1_6 93 165 IPR022967 -
Sto3g0763 409 SMART S1_6 258 328 IPR022967 -
Sto3g0763 409 SMART S1_6 181 247 IPR022967 -
Sto3g0763 409 PRINTS Ribosomal protein S1 signature 95 113 IPR035104 -
Sto3g0763 409 PRINTS Ribosomal protein S1 signature 113 127 IPR035104 -
Sto3g0763 409 PRINTS Ribosomal protein S1 signature 186 202 IPR035104 -
Sto3g0763 409 PRINTS Ribosomal protein S1 signature 204 221 IPR035104 -
Sto3g0763 409 PANTHER 30S RIBOSOMAL PROTEIN S1 2 409 - -
Sto3g0763 409 Gene3D - 255 332 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0763 Sto-Chr3 5274060 5277856 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0763 K02945 - vvi:100265325 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0763 3 5274060 5277856 Sto3g0763 3 5274060 5277856 ECH