Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0155 ATGGCTCTTCCCAAAGTTCTCATGGTCGCAGAGAAGCCTAGCATCGCTCTCTCTATTGCCTCTGTTCTCTCCCGCGGTCAGATGTCTACACGAAAGGGAAGTACAGACGTTCACGAATTTGAGGGGATATTTCGTGGATCGCATGCACACTTCAGAGTCACATCAGTTATTGGGCATATATTTAGTGTAGATTTTCCCACTACATATCAGGATTGGGCAGCCACAAATCCATTAGATCTTTTTCAAGCACCTGTTATAAAGAATGAATCAAACCCAAAGGCCCATATCTGTAGACATCTAAACCAAGAAGCTCGTGGATGTCGTTATTTGGTATTGTGGTTAGACTGTGATCGCGAAGGAGAAAATATATGTTTTGAAGTTATAGAGTCAACTACCTTCAATGTAATTGAAGATAGAAAGAGGATTTATCGTGCTCGTTTTTCTTCTGTTACTGAGAAGGATATTCTGAAGGCCTTGGACAACCTTGTGGAACCCAACAGAGACGAGGCATTGGCTGTGGATGCTAGGCAGGAGATAGATTTAAAAGTTGGAGTTGCCTTTACTCGGTTTCAGACAAGTTATTTCCAGGGAAAATATGGGAACCTAGATGCCAGAGTTATATCCTATGGACCATGTCAAACTCCTACCTTAGGCTTTTGTGTGCAGCGGTATTTGCATATAAATACCTTCAAGCCAGAAAAGTTTTGGACCTTGCACCCTTACATAATACACAATGGCTATGAAATTCAGCTAGAATGGGAACGTGGCAGATTATTTGATATAAATGTTGCTGTTATGTTTCAAAAGCAAGTAACTGAAAACGGACTTTTGGAAGTTACTGACATATCAGAAGAACAGAAAACTAAAAGTCGCCCTGTTGGTCTAAACACAGTCAATCTTCTGAAGGTTGCTTCAAGTGCTTTAGGATTTGGACCTCAAATGGCTATGCAACTAGCTGAGCGCTTGTATACTCAAGGATTCATCAGCTATCCACGTACAGAAAGCACAGCATACCCGCCTTCATTTGACTTTCAGGGTGTACTCTCTGCACAAGCAAATAATCCAACATGGGGTCATTATGTACAGGGGCTACTCACCAATGGTTATCACAAACCTCGATTAGGAACAGATGTAGGTGACCATCCTCCTATCACTCCAATGCGGTCAGCATCAGAGGATATGGTAGGTAATGATGCTTGGAAGTTGTACCAATATGTCTGTCAACACTTCTTGGGGACAGTGTCTCCGGATTGCAAGTATGCAAGGAGAAAGGTAGAATTTTCAATTGGTGGAGAGTCCTTTCATTGTACAGGGAAGCATGTCACTATCAAAGGATTTACTTCTATTATGCCTTGGTTGGcagtaaatgataaaaatattccATCCTTCACAAAAGGGCAGAAAATTGATGTGTCAAAAATGGAGCTATTTGAGGGGACTACCACACCTCCAGATTATCTTAGTGAAAGTGAGCTGATTTCCCTTATGGAGAAGAATGGGATAGGGACAGATGCGTCAATTCCCGTACATATCAACAACATCTGCGAGCGGAATTATGTGCAGGTGCAAGCAGGCAGGAAGCTTGTCCCAACTGCACTAGGTGTAAGTTTAATCAGAGGTTATCAAACAATTGATCCAGACCTCTGCCTACCTGATATCCGTAGCTTCATTGAGCAGCAAATTACTCTTATTGCTAGGGGTCAGGCAGATCATTATCGTGTTGTGCAGCATGTAATACAACAGTTCAAGCAGAAGTTTAGTTACTTTGTTAAGAAGATTGAAAATATGGATGCATTATTTGAAGCACAATTTTCTGCACTCACTGATTCAGGGCGTACAATTAGTAAATGTGGTAAATGCTTGCGATATATGAAGTACATTTCTGCTCAGCCATCACGTTTGTATTGTAATACATGCGAGGAGGTTTATTATCTTCCACAAAAGGGAACAATTAAGCTGTTCAAGGAACTGACTTGTCCTCTAGACAACTTTGAGCTTTTGATCTGCTCCATGCCTGGTCCAGAGGGTAAATCATTCCCACTCTGCCCATACTGCTACAGCAATCCTCCGTTTGAAGGTATTGAAACACTCATAAATACAGCTAAAATCGGTGCTTCTGGCAAGCTAGGGAAAGGAGCTGGAATGCCATGCATCCTCTGCCCTCATCCTACTTGCACTAACTCTCTAGTTTCCCAAGGGGTGTGTGCTTGCCCAGAGTGTAGTGGGACACTTGTGTTAGACCCAATAAGTGCTCCCAAATGGCGACTTTATTGCAACATGTGCAATTGCCTTGTTCTTCTTCCTCAAGGTGCACACAGAATCACCACAACCCGAGAACAATGCGCTGACTGCGATTCTAAAATCATAGAAGTGGACTTCAACAAGAACACAACTCCTCTGGAAGGTGGAGCTACCTTGTACCGTGGTTGCATTCTTTGTGACGAGTTGCTTCATTCCCTTGTGGAGATGAAACATGGGAAGAGTTTCAGttcaagaggaagaggaaggggaaggggaaggggaagaggaagaggaggcgGATATAGAGGCAGAGGTCGTGGTGGAAAAATGATTGATCCAAAAATGAGTTTCCGAGATTTTTAA 2604 0.4136 MALPKVLMVAEKPSIALSIASVLSRGQMSTRKGSTDVHEFEGIFRGSHAHFRVTSVIGHIFSVDFPTTYQDWAATNPLDLFQAPVIKNESNPKAHICRHLNQEARGCRYLVLWLDCDREGENICFEVIESTTFNVIEDRKRIYRARFSSVTEKDILKALDNLVEPNRDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDARVISYGPCQTPTLGFCVQRYLHINTFKPEKFWTLHPYIIHNGYEIQLEWERGRLFDINVAVMFQKQVTENGLLEVTDISEEQKTKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFQGVLSAQANNPTWGHYVQGLLTNGYHKPRLGTDVGDHPPITPMRSASEDMVGNDAWKLYQYVCQHFLGTVSPDCKYARRKVEFSIGGESFHCTGKHVTIKGFTSIMPWLAVNDKNIPSFTKGQKIDVSKMELFEGTTTPPDYLSESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTALGVSLIRGYQTIDPDLCLPDIRSFIEQQITLIARGQADHYRVVQHVIQQFKQKFSYFVKKIENMDALFEAQFSALTDSGRTISKCGKCLRYMKYISAQPSRLYCNTCEEVYYLPQKGTIKLFKELTCPLDNFELLICSMPGPEGKSFPLCPYCYSNPPFEGIETLINTAKIGASGKLGKGAGMPCILCPHPTCTNSLVSQGVCACPECSGTLVLDPISAPKWRLYCNMCNCLVLLPQGAHRITTTREQCADCDSKIIEVDFNKNTTPLEGGATLYRGCILCDELLHSLVEMKHGKSFSSRGRGRGRGRGRGRGGGYRGRGRGGKMIDPKMSFRDF 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0155 867 Pfam Toprim domain 6 149 IPR006171 -
Sto3g0155 867 MobiDBLite consensus disorder prediction 827 867 - -
Sto3g0155 867 Gene3D - 1 165 - -
Sto3g0155 867 SMART topIban2 141 237 IPR003601 GO:0003677|GO:0003916|GO:0006265
Sto3g0155 867 PANTHER PROKARYOTIC DNA TOPOISOMERASE 4 844 IPR000380 GO:0003677|GO:0003917|GO:0006265
Sto3g0155 867 Gene3D Topoisomerase I, domain 2 172 586 IPR013824 -
Sto3g0155 867 ProSiteProfiles Toprim domain profile. 5 148 IPR006171 -
Sto3g0155 867 SUPERFAMILY Prokaryotic type I DNA topoisomerase 5 626 IPR023405 -
Sto3g0155 867 CDD TOPRIM_TopoIA_TopoIII 5 162 IPR034144 -
Sto3g0155 867 Gene3D Topoisomerase I, domain 3 231 484 IPR013825 -
Sto3g0155 867 CDD TOP1Ac 168 586 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto3g0155 867 PRINTS Prokaryotic DNA topoisomerase I signature 110 123 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto3g0155 867 PRINTS Prokaryotic DNA topoisomerase I signature 207 225 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto3g0155 867 PRINTS Prokaryotic DNA topoisomerase I signature 325 334 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto3g0155 867 PRINTS Prokaryotic DNA topoisomerase I signature 402 418 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto3g0155 867 PRINTS Prokaryotic DNA topoisomerase I signature 500 514 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto3g0155 867 SMART topIaneu2 283 538 IPR003602 GO:0003677|GO:0003916|GO:0006265
Sto3g0155 867 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 320 334 IPR023406 GO:0003917
Sto3g0155 867 MobiDBLite consensus disorder prediction 830 849 - -
Sto3g0155 867 SMART toprim5 5 136 IPR006171 -
Sto3g0155 867 Gene3D Topoisomerase I, domain 4 291 416 IPR013826 -
Sto3g0155 867 Pfam DNA topoisomerase 165 575 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto3g0155 867 PANTHER DNA TOPOISOMERASE 3-BETA-1 4 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0155 Sto-Chr3 971252 979885 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0155 K03165 - gmx:100791807 1541.17