Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0149 ATGGAGAATTTGGTAACGCAGAGCCATACCCaccttctccatctccatctccaCTTGCACCCCAAGTGCAGAATAGCAAAAGCTTGGAATACCCTTTTCCTCGTAGCGCCACTGAGAAAGCCCTTCGCCAAATTCTTGTCTCTCACCACTCAAGTTCGTCGTTCCTCTATCAATTTCTCACCAACAGATACCTTCCAAGATAGCACTTCCGTAAAGCATAAAACCCTTCTTGTTGAGACTTACCATGAACATCGCAGGCTCAAAACCCTACTGCAAAAGCTGCAGAAGAGACATTCAAGTCCTCTCCAGATTCTCAGTGAAGATGGAGATTGGTCCAAAGACCATTTCTGGACCGTTGTCAGGTTCCTTAAACATGCCTCCAGATCGAAAGAGATTCTTCAGGTGTTTGATATGTGGAAGAGCATTGAAGAATCACGGATTAATGAGTTAAATTTTAACAAGATAATATGTGCATTGAGTGAGGAAGGAATGATGGAAGAGGCAGTATCTGCACTGCAGGAGATGAAAATTCATGAACTCAAACCTTCTTTGGAGACCTACAATCCAATAATTCAAGGTTACTCCCTTGAAGGTAAATTCAATGATGCTTTGCATTATCTTGGTGAGATGAAAGCATTCGGTTTAGTGCCGGACACCGAAACCTATGATAGTTTAATTCAAGGCTATGGGAAGTTTAAGATGTATGATGAGATGGGCATGTGTGTGAAAAAGATGGAGTTAGATGGATGTTCTCCTGACCATATAACTTATAATATCCTTATTCGAGAATATTCAAAAGGCGGGCTGCTCCAGAGAATGGAAAGAGTATATCAAAGGATGCTTTCCAAAAGAATGCTTTTGCAGTCTTCTACTTTGGTTGCAATGCTAGAGGCTTATGCCAGATTTGGGATAGTTATAAagatggaaaaaatttatagaaaacTTCTGAGCTCAGAAACCCCTCTAAAGGATAATTTGATAAGAAAACTGGCTGAAGTTTATATTGGGAACTATATGTATTCTagattagaggatttggggctTGACCTACGTTCGACATTTGGTGGGACTGAACTTATATGGTATTTGCGCCTCCTTTCTTATGCTTGTCTTTTGAGTCGAAAAGGCATGGATATCATCCTTCAAGAAATGCAAGAAGCCAAGGTTCACTGGAATGTTACAGTTGCAAATATTATCATGGTAGCTTATGTGAAGATGAATGATTTCACGCGCTTGAGAATTTTACTTTCTCAATTGCCAACCCATCGAGTGAAGCCTGACATAGTCACTATTGGAATTCTCTTTGATGCAACTAGAATGGGTTTTGATGGAAGTGGAGTTTTAGAAACATGGAGAAGGATGGGCTATCTTTATAGAGTTGTTGAAATTGAAACAGATCCTCTGTTCCTTGCTGCTTTTGGGAAAGGTCATTTTCTTAAAACCTGTGAAGAAGTGTACTCTTCCCTTCACCCCAAAGATAGAGAAAAGAAAACATGGACTTATGATAGCCTCATTGATTTAGTTTCTGAACATATAGAAGGCTATAAGAAGCAACAATCTTGA 1563 0.382 MENLVTQSHTHLLHLHLHLHPKCRIAKAWNTLFLVAPLRKPFAKFLSLTTQVRRSSINFSPTDTFQDSTSVKHKTLLVETYHEHRRLKTLLQKLQKRHSSPLQILSEDGDWSKDHFWTVVRFLKHASRSKEILQVFDMWKSIEESRINELNFNKIICALSEEGMMEEAVSALQEMKIHELKPSLETYNPIIQGYSLEGKFNDALHYLGEMKAFGLVPDTETYDSLIQGYGKFKMYDEMGMCVKKMELDGCSPDHITYNILIREYSKGGLLQRMERVYQRMLSKRMLLQSSTLVAMLEAYARFGIVIKMEKIYRKLLSSETPLKDNLIRKLAEVYIGNYMYSRLEDLGLDLRSTFGGTELIWYLRLLSYACLLSRKGMDIILQEMQEAKVHWNVTVANIIMVAYVKMNDFTRLRILLSQLPTHRVKPDIVTIGILFDATRMGFDGSGVLETWRRMGYLYRVVEIETDPLFLAAFGKGHFLKTCEEVYSSLHPKDREKKTWTYDSLIDLVSEHIEGYKKQQS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0149 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Sto3g0149 520 Pfam PPR repeat family 151 194 IPR002885 -
Sto3g0149 520 Pfam PPR repeat family 217 265 IPR002885 -
Sto3g0149 520 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 17 513 - -
Sto3g0149 520 Gene3D Tetratricopeptide repeat domain 360 519 IPR011990 GO:0005515
Sto3g0149 520 Gene3D Tetratricopeptide repeat domain 79 235 IPR011990 GO:0005515
Sto3g0149 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Sto3g0149 520 TIGRFAM PPR: pentatricopeptide repeat domain 186 219 IPR002885 -
Sto3g0149 520 TIGRFAM PPR: pentatricopeptide repeat domain 152 183 IPR002885 -
Sto3g0149 520 TIGRFAM PPR: pentatricopeptide repeat domain 255 284 IPR002885 -
Sto3g0149 520 TIGRFAM PPR: pentatricopeptide repeat domain 221 253 IPR002885 -
Sto3g0149 520 Gene3D Tetratricopeptide repeat domain 236 319 IPR011990 GO:0005515
Sto3g0149 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Sto3g0149 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Sto3g0149 520 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 17 513 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0149 138 454 Glycosyltransferase AT1G05670 20.795 2.60e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0149 - - ahf:112795661 674.085