LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto3g0136	ATGCCTATCTCTCACTATCTATTCCAACTTCAACAATCTGCCACGCGCCACGCCCCTTCTCTCGCCAAGAAACTCCATGCTCAAATCTTCAAACTTGGCCTTCATCTATGCCAACCCTTACCCAACACTCTCCTTGATGCATATGGAAAATGCGGTCTTCTTCAACATGCCCTCCAACTGTTCGAAGAATTGCCTCACACAGATCGTGTCTCGTGGGCATCACTTCTCACTGCCTGCAACCTATCCAACCAACCCCACGTAGCCCTCTCTGTCTCATGTTCGGTTCTTAAGGATGCTAGGTTGCAACCTGACCATTTTGTGTTTGCTAGCCTTGTTAAGGCTTGTACTAATTCCGGTGATATTAGACTAGGCAAACAAGTTCATGCTCGCTTTTTGTTGTCACCCTTTTGGGAAGATGATGTTGTGAAGTCATCATTGATCGATATGTATGCAAGATGTGGGTTTCCTGATAACGCACGTGCTGTGTTTGACTCAATTTCTTCACTAAATTCGATTTCTTGGACTGCTATGATATCTGGGTATGCACGGTGTGGGCGAAAATCAGATGCTTTTGAACTGTTTCATAGAGTGCcggaaaaaaatttgttttgttgGACTGCTTTGATTTCTGGCTTGGTACAGAGTGAGAATGAAGTTGATGGGTTATGCTTATTTATTGAAATGAGAAAAGATGGGATTGATATCGTAGACCCACTGGTTCTTTCAAGTGTAGTGGGGGCTTGTGCTAATTTAGCTGTTTTGGAACTTGGAAAACAGATACATGATCTGGTTATAACTCTTGGCTTTGAATCTTGCTTATTCGTTAGCAATGCGCTCATAGATATGTATGCCAAATGTAGTGACCTTTTAGCTGCAAAAGATATCTTCTATAACTTATGCAGGAAGGATGTAGTTTCTTGGACTTCAATTATTGTTGGCACTGCTCAGCATGGTCAAGCTGAGGAGGCATTAGCTTTGTATGATGAAATGGTTTTGGCTGGGATTAAACCAAATGAGGTCACCTTTGTAGGATTGATCTATGCCTGCAGTAACGTCGGTCTAGTTAGCAAGGGCCGCGCTTTATTCAGGTCTATGGTTGAAGATTACAGAATAAGCCCCTCTTTGAAGCACTATACTTGCTTGCTGGATCTTTTTAGTCGATCTGGCTACCTTGAGGAGGCAGAGAATCTAATTAAAACAATGCCATTCGAGCCTGATGAACCTACTTGGGCTGCTTTATTGAGTGCTTGCAAGTCCCATGGTAACACCCAGATGGCAATTAGGATTGCAGATCatctatcaaatttaaaatttcaagataCTTCCACCTATATATTGTTATCTAATATCTATGCAGGAGCTGGTATGTGGGAAAATGTGTCAAAAGTGAGAAAGTTGATGGTTATGATGGAAGTTAAAAAGGAACCAGGTTACAGTTCCATTGATTTGGGAAAGGAAAGCCATGTGTTTTATGCTGGAGAGACAAGTCATCCAATGAAGGATGAGATTCTTGTTTTGATGAGCAAGTTAGATGCAGAGATGAGGAAAAGAGGGTATGTTCCTGATACCAGTTCTGTTTTACATGACATGGATcaacaagagaaagagagacagCTTTTCTGGCATAGTGAGAGATTGGCTGTGGCTTATGGACTTCTTAAGGCTGTTCCTGGGACTATTATACGTATAGTGAAAAATCTTCGTGTTTGTGCAGATTGCCATACTGTTTTCAAACTCATCAGCACTATAACTAGCAGAGAAATTTATGTTCGAGATGTCAAAAGATATCACCACTTTAAGGATGGAAAATGTTCCTGCAATGACTTTTGGTGA	1833	0.4026	MPISHYLFQLQQSATRHAPSLAKKLHAQIFKLGLHLCQPLPNTLLDAYGKCGLLQHALQLFEELPHTDRVSWASLLTACNLSNQPHVALSVSCSVLKDARLQPDHFVFASLVKACTNSGDIRLGKQVHARFLLSPFWEDDVVKSSLIDMYARCGFPDNARAVFDSISSLNSISWTAMISGYARCGRKSDAFELFHRVPEKNLFCWTALISGLVQSENEVDGLCLFIEMRKDGIDIVDPLVLSSVVGACANLAVLELGKQIHDLVITLGFESCLFVSNALIDMYAKCSDLLAAKDIFYNLCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGIKPNEVTFVGLIYACSNVGLVSKGRALFRSMVEDYRISPSLKHYTCLLDLFSRSGYLEEAENLIKTMPFEPDEPTWAALLSACKSHGNTQMAIRIADHLSNLKFQDTSTYILLSNIYAGAGMWENVSKVRKLMVMMEVKKEPGYSSIDLGKESHVFYAGETSHPMKDEILVLMSKLDAEMRKRGYVPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRVCADCHTVFKLISTITSREIYVRDVKRYHHFKDGKCSCNDFW	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto3g0136	610	Pfam	DYW family of nucleic acid deaminases	518	610	IPR032867	GO:0008270
	Sto3g0136	610	Gene3D	Tetratricopeptide repeat domain	4	128	IPR011990	GO:0005515
	Sto3g0136	610	Gene3D	Tetratricopeptide repeat domain	129	255	IPR011990	GO:0005515
	Sto3g0136	610	Pfam	PPR repeat family	302	350	IPR002885	-
	Sto3g0136	610	Gene3D	Tetratricopeptide repeat domain	325	490	IPR011990	GO:0005515
	Sto3g0136	610	Pfam	E motif	420	481	IPR046848	-
	Sto3g0136	610	Pfam	PPR repeat	377	401	IPR002885	-
	Sto3g0136	610	Pfam	PPR repeat	42	64	IPR002885	-
	Sto3g0136	610	Pfam	PPR repeat	144	167	IPR002885	-
	Sto3g0136	610	Pfam	PPR repeat	172	201	IPR002885	-
	Sto3g0136	610	Pfam	PPR repeat	204	233	IPR002885	-
	Sto3g0136	610	PANTHER	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	6	598	-	-
	Sto3g0136	610	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	303	337	IPR002885	-
	Sto3g0136	610	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	170	204	IPR002885	-
	Sto3g0136	610	PANTHER	OS11G0661000 PROTEIN	6	598	-	-
	Sto3g0136	610	TIGRFAM	PPR: pentatricopeptide repeat domain	305	339	IPR002885	-
	Sto3g0136	610	TIGRFAM	PPR: pentatricopeptide repeat domain	340	374	IPR002885	-
	Sto3g0136	610	TIGRFAM	PPR: pentatricopeptide repeat domain	172	200	IPR002885	-
	Sto3g0136	610	TIGRFAM	PPR: pentatricopeptide repeat domain	203	233	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto3g0136	Sto-Chr3	825471	827303	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto3g0136	20	610	Glycoside Hydrolase	AT3G49170	37.043	6.15e-134	410

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto3g0136	-		-	gmx:100782048	957.977