Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0116 ATGGATTCCGTTTCCGCTTGGGGAAACACGCCTCTCCAAACCGTCGACCCAGAAATCTTCGACCTCATTGAGAAGGAGAAGCGTCGCCAATGTCGCGGCATCGAGCTCATTGCATCCGAAAACTTCACTTCCTTCGCCGTCATCGAAGCCCTCGGCAGTGCCTTGACCAACAAGTACTCCGAAGGCATGCCCGGCAACCGTTACTACGGTGGCAACGAGTACATCGACGAGATCGAGAATCTCTCCAATTTCGCCGCCTACACCGCTGTGCTTCAGCCCCATGACCGCATCATGGGCTTGGATCTGCCTTCTGGTGGTCACTTGACTCATGGTTACTACACCGCCGGAGGGAAGAAGATCTCTGCCACCTCCATTTATTTCGAGAGTTTGCCTTACAAGGTGAATTCCACTACTGGATTCATTGACTATGACAAGCTGGAGGAGAAGGCTTTGGATTTCAGGCCAAAGTTGATTATTTGTGGTGGAAGCGCCTACCCCAGGGACTGGGATTACAAGAAAATCCGGGAGATTGCGGATAAGTGTGGTGCTCTCATGCTCTGTGATATGGCCCACATCAGTGGTCTTGTTGCTGCTCAGGAAGCTAATAACCCCTTTGAGTACTGTGACTTGGTCACAACAACCACCCACAAGAGCTTGAGGGGTCCTAGGGCAGGTATGATCTTCTACAGGAAAGGACCTAAACCACCCAAGAAGGGCCAGCCTGAGGATGCAGTTTATGATTTTGAAGACAAGATCAATTTCGCTGTATTCCCCTCCCTTCAGGGCGGTCCTCACAATCACCAGATTGGTGCCCTTGCTGTTGCCCTGAAACAGGCCGCATCACCTGCATTCAAGGCCTATGCCAAGCAAATTAAGGCCAATGCAGTTGCCCTTGGAAATTTCTTGATGAGCAAAGGGTACAAGCTTGTCACTGGAGGAACTGAGAACCATCTTGTCTTGTGGGATCTCCGCCCTCTTGGTTTGACTGGCAACAAGGTGGAGAAACTTTGTGACCTATGTAACATTACCGTGAACAAAAATGCTGTTTTTGGCGATAGCAGTGCCTTGGCTCCTGGAGGAGTTCGCATTGGTGCACCGGCCATGACTTCAAGAGGGTTGGTTGAGAAAGACTTTGAGCAGATAGGAGAGTTCCTTCACCGTGCAGTGACAATCACATTGGATATACAGAAGCAACATGGCAAACTTTTGAAGGACTTCAACAAGGGTTTAGTGGACAACAAGGATATTGCAGCCCTCAAGGCCGATGTGGAGAAGTTTGCAGGCTCATTTGACATGCCTGGCTTCCTGGTATCCGAGATGAAGTACAAGGATTAG 1335 0.5004 MDSVSAWGNTPLQTVDPEIFDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEYIDEIENLSNFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVNSTTGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYKKIREIADKCGALMLCDMAHISGLVAAQEANNPFEYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEDAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAASPAFKAYAKQIKANAVALGNFLMSKGYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTITLDIQKQHGKLLKDFNKGLVDNKDIAALKADVEKFAGSFDMPGFLVSEMKYKD 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0116 444 Gene3D - 41 285 IPR015421 GO:0003824
Sto3g0116 444 Gene3D Aspartate Aminotransferase, domain 1 286 436 IPR015422 GO:0003824
Sto3g0116 444 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 209 225 IPR019798 GO:0030170
Sto3g0116 444 PIRSF SHMT 1 83 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Sto3g0116 444 PIRSF SHMT 80 439 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Sto3g0116 444 SUPERFAMILY PLP-dependent transferases 4 436 IPR015424 -
Sto3g0116 444 Hamap Serine hydroxymethyltransferase [glyA]. 11 434 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Sto3g0116 444 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 82 443 - -
Sto3g0116 444 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 82 - -
Sto3g0116 444 CDD SHMT 15 426 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Sto3g0116 444 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 82 443 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Sto3g0116 444 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 82 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Sto3g0116 444 Pfam Serine hydroxymethyltransferase 82 384 IPR039429 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0116 Sto-Chr3 721686 724135 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0116 K00600 - egr:104414282 819.69