Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0090 ATGGTGAAGAAGCGGGTCCCTGACTGGCTCAACAGTTCTCTTTGGTCCTCCGCTCCTTCCTCCGCCACGCCTACTACCACCTATGCCAATGAAGAGCAAGAGCACACCGTGGTGGACCCACCTATACCACCGCCTTCTCCTTCACCACCTACCAGAGAAGATCCTCCGCAGCCCCAGAGAATTGAAAATTCACGAACTAATAACGTTACGAACGATCACAATGGCACTTCTTCCCCTCCTTCCACGGATGACATCTCTCGCCAGGCTCAACTGTTGGCCGAGCTATCGAGAAAGGTGATAGATATAAGGGAGTTGAGGAGAATCGCCTGTCAAGGTATACCTGATGGTGCTGGTATACGTTCTACCGTATGGAAGCTTTTGCTTGGATATCTTCCACTGGATCGTGGGCTTTGGTCATCTGAATTAGCAAAAAAGAGGTCTCAGTATAAACATTTCAAAGAAGAGATCTTGATGAATCCTTCAGAAATTACAAGGAAGATGTTCAGCTCTACAAGTGACACTTCTGATGCTAAATGTGAGAGTCGAGGTTTGCTCTCAAGATCTGAAATCACTCACGGGGAGCATCCTTTGAGTCTTGGGAAGACAAGCATATGGAATCAGTTCTTCCAGGACACAGAGATAATAGATCAGATTGATCGAGATGTAAAGCGCACTCATCcagatatgaattttttttctggTGATTCTCAATTTGCAAAATCAAATCAGGAGGCTTTGAAgaacatattaattatttttgcgAAGTTAAATCCAGGTGTACGATATGTACAAGGCATGAATGAGATATTGGCCCCTCTATTCTATGTGTTTAAAAATGACCCTGATGAGGAAAATGCAGCCTTTGCTGAGGCAGACACattcttttgttttgttgagcTATTAAGTGGGTTCCGAGATAATTTTTGTCAACAACTTGACAATAGTGTTGTGGGAATCCGCTCCACTATTGCACGATTGTCCCAACTTTTGAGAGAACATGATGAAGAGCTGTGGCGTCATCTTGAGATCACAACTAAAGTCAATCCCCAATTCTATGCATTTAGGTGGATTACACTCCTCTTGACTCAGGAATTCAATTTTGCTGACAGCCTTCACATTTGGGACACTCTTTTAAGTGATCCGGAAGGTCCACAGGAGACTTTGTTACGGGTTTGCTGTGCAATGCTAATTCTTGTACGGAGGCGCCTCCTAGCGGGTGATTTCACTTCCAATCTCAAGTTGCTGCAAAATTACCCCTCTACAAACATTAGCCATTTGCTCTATGTTGCCAATAAGTTGCGTGTACAGTCGGTGTAA 1317 0.4267 MVKKRVPDWLNSSLWSSAPSSATPTTTYANEEQEHTVVDPPIPPPSPSPPTREDPPQPQRIENSRTNNVTNDHNGTSSPPSTDDISRQAQLLAELSRKVIDIRELRRIACQGIPDGAGIRSTVWKLLLGYLPLDRGLWSSELAKKRSQYKHFKEEILMNPSEITRKMFSSTSDTSDAKCESRGLLSRSEITHGEHPLSLGKTSIWNQFFQDTEIIDQIDRDVKRTHPDMNFFSGDSQFAKSNQEALKNILIIFAKLNPGVRYVQGMNEILAPLFYVFKNDPDEENAAFAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTIARLSQLLREHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPEGPQETLLRVCCAMLILVRRRLLAGDFTSNLKLLQNYPSTNISHLLYVANKLRVQSV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0090 438 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 200 309 - -
Sto3g0090 438 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 93 340 IPR035969 -
Sto3g0090 438 SMART tbc_4 109 407 IPR000195 -
Sto3g0090 438 MobiDBLite consensus disorder prediction 10 33 - -
Sto3g0090 438 MobiDBLite consensus disorder prediction 38 56 - -
Sto3g0090 438 Gene3D - 317 437 - -
Sto3g0090 438 ProSiteProfiles TBC/rab GAP domain profile. 114 381 IPR000195 -
Sto3g0090 438 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 436 - -
Sto3g0090 438 Gene3D - 84 137 - -
Sto3g0090 438 MobiDBLite consensus disorder prediction 1 85 - -
Sto3g0090 438 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 318 435 IPR035969 -
Sto3g0090 438 MobiDBLite consensus disorder prediction 60 85 - -
Sto3g0090 438 Pfam Rab-GTPase-TBC domain 211 402 IPR000195 -
Sto3g0090 438 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 3 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0090 Sto-Chr3 506221 510541 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0090 K24796 - vvi:100241872 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0090 3 506221 510541 Sto3g0090 3 506221 510541 ECH