Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0072 ATGAGTTTGCCAAACTATCTTGCACCTAAGTCTTGCATCGTTAATATTAGGAAATCAACAAGTAGAAAATTTAGTGTTGTAAGAGCAGAAGTGACATTGGCTCCCAAACGAACAAGAGACTTGTCAAAACAAGGAGTTTCTATTGCTGATTTGCGCGTACATGAAATTGTAGAGAGGCAGACTCAACCTCATAAGTTGATCACCACAAGTCTTTGCAATAAACCTCAGTTCCATCCTTGTTTTCTAAAAGAAGCATTTGAAAATTGCAGGAAGATTTGTGCAGAATATGCCAAGACTTTCTATCTAGGAAGTCTACTCATGACAGAAGAAAGACAGAAAGCTATATGGGCAATATATGTTTGGTGCAGGAGGACAGATGAATTGGTTGATGGTCCTAACGCCATTTATATGAGCTCCACTGTTCTTGATAGATGGGAAGAGAGACTTGATGACATTTTCAATGGACGCCCCTATGATATGCTTGATGCTGCTCTTGCTGATACTGTCTCCAGGTTCCCCTTGGACATTAAGCCCTTCAGGGACATGATAGAAGGTATGAGAATGGATACATGGAAAGGCCGGTACAAGAATTTTGAAGAACTGTATCTTTACTGCTACTATGTGGCTGGAACTGTTGGTTTAATGAGTGTTCCAGTAATGGGAATCGCAGCAGAATCACTTATCCCTGCTCAAAGTGTATATAATTCAGCACTATATTTGGGCATTGGGAATCAGCTGACAAACATTCTTAGAGATGTGGGGGAGGACGCATCAAGAGGTAGAGTGTACCTTCCCCAAGATGAACTTGGTCAGTTCGGTTTGAGTGACAAGGATATTTTCTCAAGAAAGGTCACGGAAGAATGGAGAGAGTTTATGAAACATCAGATCACAAGGGCAAGATTCTACTTCAACTTGGCAGAGGAAGGAGCTTCTCAGCTTGACAAAGCTAGCCGTTGGCCGGTTTGGTCGTCCTTAATATTATATGGTAAGATCTTGGATGCAATAGAAGACAATGGCTACGACAATTTGACAAAAAGGGCATACGTAGGACGAGCCAAGAAACTTCTGATGTTGCCTCTGGCTTACACCAGAtctctctctttccctctcAAGTAG 1116 0.4095 MSLPNYLAPKSCIVNIRKSTSRKFSVVRAEVTLAPKRTRDLSKQGVSIADLRVHEIVERQTQPHKLITTSLCNKPQFHPCFLKEAFENCRKICAEYAKTFYLGSLLMTEERQKAIWAIYVWCRRTDELVDGPNAIYMSSTVLDRWEERLDDIFNGRPYDMLDAALADTVSRFPLDIKPFRDMIEGMRMDTWKGRYKNFEELYLYCYYVAGTVGLMSVPVMGIAAESLIPAQSVYNSALYLGIGNQLTNILRDVGEDASRGRVYLPQDELGQFGLSDKDIFSRKVTEEWREFMKHQITRARFYFNLAEEGASQLDKASRWPVWSSLILYGKILDAIEDNGYDNLTKRAYVGRAKKLLMLPLAYTRSLSFPLK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0072 371 Pfam Squalene/phytoene synthase 96 351 IPR002060 GO:0009058
Sto3g0072 371 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 18 368 - -
Sto3g0072 371 ProSitePatterns Squalene and phytoene synthases signature 1. 204 219 IPR019845 GO:0016765
Sto3g0072 371 SFLD Phytoene synthase like 83 364 IPR044843 GO:0004311
Sto3g0072 371 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 18 368 - -
Sto3g0072 371 CDD Trans_IPPS_HH 89 354 IPR033904 GO:0004311
Sto3g0072 371 SUPERFAMILY Terpenoid synthases 85 366 IPR008949 -
Sto3g0072 371 ProSitePatterns Squalene and phytoene synthases signature 2. 240 265 IPR019845 GO:0016765
Sto3g0072 371 Gene3D Farnesyl Diphosphate Synthase 80 361 IPR008949 -
Sto3g0072 371 SFLD Isoprenoid Synthase Type I 83 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0072 Sto-Chr3 423036 424784 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0072 K02291 - jre:108981322 563.533