Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g1094 ATGGCCACAACACTTGCCTACCGTCACTTCCTCTTTCTGAACTCCACCTCGCCGGAGAAGTTCTCGCGGCGGAAGCCCGCCGCCACCTCTCGGAAACCCCGCCGGCGTTTCGACCTCGACACTGAGCCGGGAACCTCCGAATTACAGCATCGCCACACACAATCCGTGAATCCAAAACCTTCTAGGAACCTTCCCAATAATCCCTTTCTCACAAGGGCTCTCATTGACGCAGTGGTTTCTGGGTCCATGGAAGGTGCACACAACCTGTTCGAGAAAATGCACCACTGGGACACTTTCATTTGGAATGTCATGATTAGAGGGTATACGGATAGAGGGTTGTTTCAAGAGGCGGTTAATTTGTATGAGAGGATGGAAGATGAAGGGGTTCCTATGGATAATCTCACGTACACTTTTGTGATTAAAGCTTGCGGTGGATTGTTGGCATTGACGCAAGGGGAAAAGATTCATGGAAAGTTGTTTAAGGTGGGATTAGACGTGGATGTTTATATATGCAATGCTCTTGTTTCTATGTATGGGAAGTTTGGGCTCGTTGATttagcatggaaggtgtttgaaGAAATGCCTGTGAGAGATTTGGTTTCTTGGAACTCTATGATGGGTGCATATTCTTTGGTCAAAGAACATCTGAAGTCATTAAAGTGCTTTAGAGAAATGCTAGAAATTGGGATTCAACCAGATAAATTCACCATAATGAATGTGCTTGATGCATGTTCTCTTGGTGATTCTCTGTTCTGGGGAAAAGAAACACACTGCGTCGCTCTCAAATTCGGGTTTGATTCGGATGTTATGGTCCAGACCTTGCTTATTGACATGTACAGCAAGTGTGGAAGTCTAAACTATGCCGAGAGAGTTTTCGGCagaatttctctaacaaatgtTGTGGCTTGGAATGCAATGATTGGTGGCTATGCACAAAATGGTGAACCACTTCAGGCATTGCGTTCCTTGAAGAAGATGCTCAAGAGTGAGAATGTGAAAGTTGATCGTATTACACTCATAAACTTGCTTCCTTCTTGTGCCCAATTAGGAGCTGTTTTGCCAGGTGTTGGAGATATAAAGACAGCACGGGAAATTTTCGATCGAACGACGTTTAAGGATATCGTATCATGGAATACTATGATGATGGCTTATGCCATTCATGGTATGGGGAAAATTTCCATTGAACTATTCTCTGAAATGAAGAGACAAGGAATCAAGCCTAATGATAGCACTTTTGTTTCACTATTATcctcttgtagcaattctggtATGGTTAATGAAGGGTGGATGTACTATAATTCCATGAAACTAGACTATGGAATAGAGCCTAAAATAGAGCACTATGGATGCATGCTTGATCTTATTGGTAGAACTGGTGAATTGGACCGAGCCATGAGTTTTATAGAAGAAATGCCGGTACCGCCTACCGCCCGGATATGGGGATCGTTATTGAACGCGAgcagaaagaaaagaaacatagAATTAGCTGAACTTGCTGCTCAGAACATCTTGTCCATAGATCATGATAATACTGGGTGTTACATCTTACTTTCCAATATGTATGCTGAAGCTGGGAGGTGGGAGAAAGTGGAACACATAAAATCCATCATGAAGAAAGCAGGATCAGACAAAACAGTGGCATGCAGCATTATAGAGACTAAACTTGGTCTTCACAGATTTACAAATGATGACAGATCTCACGTTGATTCCGAAATGATCTATAATGTTCGAGATATCGTATCGAGGAAAACTGGTGATAAAAACTGCATCATCTCTAATCTCACCAAGTTCAAGCCATCAGATTTGGCTAGAAAAAGAGCAAATTTGCCAGAGAACCACAGTGTGAGATTGGCAATTTGTTTTGGATTGATATCTACAGCAATTGGAAATCCAGTTCTGGTGAGGAAAAACATGAGAATATGTGAAGATTGCCATATTGCTGTGAAGAAGATTTCAGAGATgagcagaagagaaatcatagTAGGGGATTCTAAGGTGTTCCATCACTTCAGAGATGGGAATTGCTCTTGTGGTGATTACTGGTAA 2046 0.4042 MATTLAYRHFLFLNSTSPEKFSRRKPAATSRKPRRRFDLDTEPGTSELQHRHTQSVNPKPSRNLPNNPFLTRALIDAVVSGSMEGAHNLFEKMHHWDTFIWNVMIRGYTDRGLFQEAVNLYERMEDEGVPMDNLTYTFVIKACGGLLALTQGEKIHGKLFKVGLDVDVYICNALVSMYGKFGLVDLAWKVFEEMPVRDLVSWNSMMGAYSLVKEHLKSLKCFREMLEIGIQPDKFTIMNVLDACSLGDSLFWGKETHCVALKFGFDSDVMVQTLLIDMYSKCGSLNYAERVFGRISLTNVVAWNAMIGGYAQNGEPLQALRSLKKMLKSENVKVDRITLINLLPSCAQLGAVLPGVGDIKTAREIFDRTTFKDIVSWNTMMMAYAIHGMGKISIELFSEMKRQGIKPNDSTFVSLLSSCSNSGMVNEGWMYYNSMKLDYGIEPKIEHYGCMLDLIGRTGELDRAMSFIEEMPVPPTARIWGSLLNASRKKRNIELAELAAQNILSIDHDNTGCYILLSNMYAEAGRWEKVEHIKSIMKKAGSDKTVACSIIETKLGLHRFTNDDRSHVDSEMIYNVRDIVSRKTGDKNCIISNLTKFKPSDLARKRANLPENHSVRLAICFGLISTAIGNPVLVRKNMRICEDCHIAVKKISEMSRREIIVGDSKVFHHFRDGNCSCGDYW 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g1094 681 TIGRFAM PPR: pentatricopeptide repeat domain 301 335 IPR002885 -
Sto2g1094 681 TIGRFAM PPR: pentatricopeptide repeat domain 169 199 IPR002885 -
Sto2g1094 681 TIGRFAM PPR: pentatricopeptide repeat domain 375 408 IPR002885 -
Sto2g1094 681 TIGRFAM PPR: pentatricopeptide repeat domain 411 443 IPR002885 -
Sto2g1094 681 TIGRFAM PPR: pentatricopeptide repeat domain 200 233 IPR002885 -
Sto2g1094 681 TIGRFAM PPR: pentatricopeptide repeat domain 100 132 IPR002885 -
Sto2g1094 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Sto2g1094 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Sto2g1094 681 PANTHER BNAANNG11600D PROTEIN 75 349 - -
Sto2g1094 681 PANTHER BNAANNG11600D PROTEIN 357 675 - -
Sto2g1094 681 Gene3D Tetratricopeptide repeat domain 355 564 IPR011990 GO:0005515
Sto2g1094 681 Gene3D Tetratricopeptide repeat domain 256 353 IPR011990 GO:0005515
Sto2g1094 681 Gene3D Tetratricopeptide repeat domain 148 249 IPR011990 GO:0005515
Sto2g1094 681 Gene3D Tetratricopeptide repeat domain 59 147 IPR011990 GO:0005515
Sto2g1094 681 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 75 349 - -
Sto2g1094 681 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 357 675 - -
Sto2g1094 681 MobiDBLite consensus disorder prediction 21 65 - -
Sto2g1094 681 Pfam PPR repeat family 97 143 IPR002885 -
Sto2g1094 681 Pfam PPR repeat family 372 420 IPR002885 -
Sto2g1094 681 MobiDBLite consensus disorder prediction 32 47 - -
Sto2g1094 681 Pfam DYW family of nucleic acid deaminases 606 681 IPR032867 GO:0008270
Sto2g1094 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Sto2g1094 681 MobiDBLite consensus disorder prediction 48 65 - -
Sto2g1094 681 Pfam PPR repeat 301 329 IPR002885 -
Sto2g1094 681 Pfam PPR repeat 273 294 IPR002885 -
Sto2g1094 681 Pfam PPR repeat 447 471 IPR002885 -
Sto2g1094 681 Pfam PPR repeat 170 197 IPR002885 -
Sto2g1094 681 Pfam PPR repeat 200 230 IPR002885 -
Sto2g1094 681 Pfam E motif 492 552 IPR046848 -
Sto2g1094 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 197 IPR002885 -
Sto2g1094 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g1094 Sto-Chr2 9593872 9596304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g1094 73 681 Glycoside Hydrolase AT3G49170 33.997 6.76e-114 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g1094 - - aip:107619622 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g1094 2 9593872 9596304 Sto2g1094 2 9593872 9596304 ECH