Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0993 ATGGCGGAAGAATACGAGCAGGACGGTGATCAGGTGGAAGAAGAGTTCGCCGTTTGGAAGAAGAACACTCCTTTCTTGTACGACCTCGTCGTTTCGCAACCTCTTCAATGGCCTTCTCTCACTGTCCACTGGGTTCCCTCCTCCCCGCAACCCCATCCCCACCCTTCCTTCAACCTCCATAAGCTTGTCCTCGGCACTCACACTTCCGAAGGCGTCCCCAACTTCCTCATGATCGCCGATGCTGTGCTCCCCGTGAAGACATCAGATGCCGTCGTTAATTCCGGTTCCGAGAATCCGGTTATTCCCAAGATAGAGATTACTCAAAAGATTCACGTTGACGGCGAGGTGAATCGAGCGCGGTGCATGCCGCAAAACCCGAATGTTATCGGCGCTAAGACTGCTAGCTCTGAGGTTTATGTGTTCGATTGTGCAAAACAACTTGCAAAGCAACAAGGTCTTGGTTGTGACCCTGATTTGAGATTGAGGGGTCATGATAAAGAAGGGTATGGTTTGTCTTGGAGCCCCTTTAAGGAGGGGTACCTTTTGAGTGGTTCCCATGACCAGAAGGTTTGCTTGTGGGATATATCAGGTTCAGCTGAGGGGAACGAGCTCAATGCAATTCACATTTATGAGGCCCATGAAAGTGTGGTTGAAGATGTATCATGGCATATGAAGAATGAGAATTTATTTGGTTCGGTGGGAGATGACTGCAAGTTGATTATTTGGGACTTGCGGACAAACCAAGCCCAGCACTCAGTCAAAGCACATGAAAGGGAGGTGAACTTTCTCTCTTTCAATCCATTTAATGAATGGATTTTGGCTACAGCATCTTCAGACTCCACTGTTGGTCTCTTTGATACACGGAAGCTGACAGAGCCTCTTCATGTTTTAAGCAGCCACACAGATGAGGTTTTCCAGGTAGAATGGGATCCTAATCATGAGACTGTGTTGGCATCTTCTGGTGCTGATAGAAGGTTAATGGTTTGGGACCTGAACAgGATTGGGGATGAGCAATTAGAAGGAGATGGCGATGACGGTCCTCCTGAGCTTCTTTTCTCTCATGGGGGGCACAAAGGGAAAATCTCAGACTTTTCGTGGAACAAAAATCTGCCATGGGTCATCTCAAGTGTAGCCGAGGACAATTCTTTCCAGGTATGGCAAATGGCCGAGGGCATTTAccatgatggtgatgatgaagaCACCGAAAATCAGGCATAG 1218 0.4721 MAEEYEQDGDQVEEEFAVWKKNTPFLYDLVVSQPLQWPSLTVHWVPSSPQPHPHPSFNLHKLVLGTHTSEGVPNFLMIADAVLPVKTSDAVVNSGSENPVIPKIEITQKIHVDGEVNRARCMPQNPNVIGAKTASSEVYVFDCAKQLAKQQGLGCDPDLRLRGHDKEGYGLSWSPFKEGYLLSGSHDQKVCLWDISGSAEGNELNAIHIYEAHESVVEDVSWHMKNENLFGSVGDDCKLIIWDLRTNQAQHSVKAHEREVNFLSFNPFNEWILATASSDSTVGLFDTRKLTEPLHVLSSHTDEVFQVEWDPNHETVLASSGADRRLMVWDLNRIGDEQLEGDGDDGPPELLFSHGGHKGKISDFSWNKNLPWVISSVAEDNSFQVWQMAEGIYHDGDDEDTENQA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0993 405 ProSitePatterns Trp-Asp (WD) repeats signature. 181 195 IPR019775 -
Sto2g0993 405 ProSitePatterns Trp-Asp (WD) repeats signature. 317 331 IPR019775 -
Sto2g0993 405 Pfam WD domain, G-beta repeat 292 330 IPR001680 GO:0005515
Sto2g0993 405 Pfam WD domain, G-beta repeat 206 243 IPR001680 GO:0005515
Sto2g0993 405 Pfam WD domain, G-beta repeat 351 386 IPR001680 GO:0005515
Sto2g0993 405 Pfam WD domain, G-beta repeat 248 286 IPR001680 GO:0005515
Sto2g0993 405 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 14 84 IPR022052 -
Sto2g0993 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 297 332 - -
Sto2g0993 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 252 IPR001680 GO:0005515
Sto2g0993 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 161 196 - -
Sto2g0993 405 PRINTS G protein beta WD-40 repeat signature 181 195 IPR020472 -
Sto2g0993 405 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Sto2g0993 405 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Sto2g0993 405 Gene3D - 1 405 IPR015943 GO:0005515
Sto2g0993 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 332 IPR001680 GO:0005515
Sto2g0993 405 PANTHER WD40 REPEAT FAMILY 1 402 - -
Sto2g0993 405 SMART WD40_4 154 194 IPR001680 GO:0005515
Sto2g0993 405 SMART WD40_4 203 243 IPR001680 GO:0005515
Sto2g0993 405 SMART WD40_4 347 387 IPR001680 GO:0005515
Sto2g0993 405 SMART WD40_4 290 330 IPR001680 GO:0005515
Sto2g0993 405 SMART WD40_4 246 286 IPR001680 GO:0005515
Sto2g0993 405 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 1 402 - -
Sto2g0993 405 SUPERFAMILY WD40 repeat-like 107 391 IPR036322 GO:0005515
Sto2g0993 405 Coils Coil 2 22 - -
Sto2g0993 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 161 196 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0993 Sto-Chr2 8746874 8750049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0993 178 398 Miscellaneous Gene Families AT5G08390 27.149 1.15e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0993 K10752 - gmx:100791834 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0993 2 8746874 8750049 Sto2g0993 2 8746874 8750049 ECH