Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0886 ATGGTTTCTATTTCTACAGCAACAACAAGGTACGCCATCCCCAAATTTCCTCTCTTGTTtacatcttctccttcttcctccttccttCGCTCTTTCCCTAATTATGCCCTCTTTCTCAATCTCTCTTTTCATTCTCATCatcccccaaaccctaacgACATCCAGCAAGATGTCGCTTCTTTCAATCGCTTGCTCCATCTGCGTCCCCCACCCTCCATTATCCAAATTAATAAGCTTTTAGGATCACTAGCAAAGATGAGGCATTATCCGACTGTTATTTCACTTTGGACACGAGCAAAATCTAGGGGATTCATGCCATGTATTATTCTCAAGAACGGTAATCAACCCAATATCATAACTTTGACTACACTAATGAGAGGATTCTGCATTAATAACAAGGTTGGGGAAGCATTGGATTTTTACGATGACTTAATGGCTAAAGGATTTCTGTTAGACGAAGTTAGTTACGGCACCTTAATCAATGGCTTATGTAAAACTGGAGAAATAAGAGCGGCCTATAAATTGCTACAATCGATGAAGAGATACTTAGTCAAGCCTAATGTAGTTATGTACAGCACAGTCATAGATGGCATGTGTAAAATTGGATTGGTAAATGAGGCACATGATTTGTGTGATGAAATGATTGATGGAGGAATTTCCCCTAATATTGTCACTTACAGCTCTTTAATTCACGGTTTCTCTAGTATTGGTCAATGGCAAGAAGCAACACGGTTCCTAAACGAAATGGTAATGAAAAGCATCATCCCAGATGTTCAAACTTTTACTATACTGGTTGATTCATTTTGTAAGGAAGGCAGGATCACAGAAGCGCTAGCAGTATTTGCTACCTTGATGAAGTATGGTCAAAAGCCTAATGTTTTTGCCTACAATGCTTTAATGGATGGGTATTGTTTGGTCAACAATATGGATGAGTCAAAGGAAATATTCATCAAGATGGTCAAAAGTGGTTTGAAACCAGATGTTGTTagttataatattttgattaatggATACTGTAAGATGAAAAGAGTTGATGAAGCTTTGGATCTCTTTAAAGAGATGTCTTGCAAAAACTTGGTTCCTAATGTCGTAACTTATAATTCTCTTATTGATGGCTTGTGCAAATTAGGGAGAATCTCATATGTCCAAGATCTTATTTATGAAATGCATGAGAGTGGTCATCCCCCTGATATATTCACTTACACTACCTTGTTAGATGCATTTTGCAAAAGACATCTTCTTGACAAGGCAATTGAATTGTATATGCATATTGAGGATCAAGGTATTCAACCCAATTTGTGCACTTACAATACACTTATTGATGGTTTGTGCAAAGGTGGAAGACTAGGCACTGCACTAAAGATTTTTCGGAACCTTTTGATCAACGGTTATTGTTTAAATGTTCGGACATATAACATTATGATCAATGGCCTTTGCATTGAAGGCTTGTTTGATGAAGCAATAAACTTGCTTTCCAAAATGAAAGAGAATGGTTGCATCCCTGATTCAATAACATATGAAACACTTATTCGAACACTTCTGGAAAAGGGTGAGAATGATACGGCAAAGAAGCTTCTTCATGAGATGGTTGCTAGCGGTCTTCTAAAACGATAG 1614 0.3594 MVSISTATTRYAIPKFPLLFTSSPSSSFLRSFPNYALFLNLSFHSHHPPNPNDIQQDVASFNRLLHLRPPPSIIQINKLLGSLAKMRHYPTVISLWTRAKSRGFMPCIILKNGNQPNIITLTTLMRGFCINNKVGEALDFYDDLMAKGFLLDEVSYGTLINGLCKTGEIRAAYKLLQSMKRYLVKPNVVMYSTVIDGMCKIGLVNEAHDLCDEMIDGGISPNIVTYSSLIHGFSSIGQWQEATRFLNEMVMKSIIPDVQTFTILVDSFCKEGRITEALAVFATLMKYGQKPNVFAYNALMDGYCLVNNMDESKEIFIKMVKSGLKPDVVSYNILINGYCKMKRVDEALDLFKEMSCKNLVPNVVTYNSLIDGLCKLGRISYVQDLIYEMHESGHPPDIFTYTTLLDAFCKRHLLDKAIELYMHIEDQGIQPNLCTYNTLIDGLCKGGRLGTALKIFRNLLINGYCLNVRTYNIMINGLCIEGLFDEAINLLSKMKENGCIPDSITYETLIRTLLEKGENDTAKKLLHEMVASGLLKR 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0886 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Sto2g0886 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Sto2g0886 537 PANTHER OS10G0495100 PROTEIN 48 535 - -
Sto2g0886 537 Gene3D Tetratricopeptide repeat domain 251 322 IPR011990 GO:0005515
Sto2g0886 537 Gene3D Tetratricopeptide repeat domain 182 250 IPR011990 GO:0005515
Sto2g0886 537 Gene3D Tetratricopeptide repeat domain 463 532 IPR011990 GO:0005515
Sto2g0886 537 Gene3D Tetratricopeptide repeat domain 51 181 IPR011990 GO:0005515
Sto2g0886 537 Gene3D Tetratricopeptide repeat domain 323 462 IPR011990 GO:0005515
Sto2g0886 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Sto2g0886 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Sto2g0886 537 Pfam PPR repeat 288 320 IPR002885 -
Sto2g0886 537 Pfam PPR repeat 254 281 IPR002885 -
Sto2g0886 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Sto2g0886 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Sto2g0886 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Sto2g0886 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Sto2g0886 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Sto2g0886 537 Pfam PPR repeat family 116 165 IPR002885 -
Sto2g0886 537 Pfam PPR repeat family 467 513 IPR002885 -
Sto2g0886 537 Pfam PPR repeat family 326 375 IPR002885 -
Sto2g0886 537 Pfam PPR repeat family 396 445 IPR002885 -
Sto2g0886 537 Pfam PPR repeat family 186 234 IPR002885 -
Sto2g0886 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Sto2g0886 537 SUPERFAMILY HCP-like 269 498 - -
Sto2g0886 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Sto2g0886 537 TIGRFAM PPR: pentatricopeptide repeat domain 434 467 IPR002885 -
Sto2g0886 537 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Sto2g0886 537 TIGRFAM PPR: pentatricopeptide repeat domain 260 293 IPR002885 -
Sto2g0886 537 TIGRFAM PPR: pentatricopeptide repeat domain 295 328 IPR002885 -
Sto2g0886 537 TIGRFAM PPR: pentatricopeptide repeat domain 119 152 IPR002885 -
Sto2g0886 537 TIGRFAM PPR: pentatricopeptide repeat domain 364 398 IPR002885 -
Sto2g0886 537 TIGRFAM PPR: pentatricopeptide repeat domain 154 187 IPR002885 -
Sto2g0886 537 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Sto2g0886 537 TIGRFAM PPR: pentatricopeptide repeat domain 470 503 IPR002885 -
Sto2g0886 537 TIGRFAM PPR: pentatricopeptide repeat domain 329 363 IPR002885 -
Sto2g0886 537 TIGRFAM PPR: pentatricopeptide repeat domain 189 223 IPR002885 -
Sto2g0886 537 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Sto2g0886 537 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 48 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0886 Sto-Chr2 7682579 7684267 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0886 57 535 Glycosyltransferase AT1G05670 29.857 3.41e-77 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0886 - - gmx:102663208 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0886 2 7682579 7684267 Sto2g0886 2 7682579 7684267 ECH