Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0770 ATGGCAGAACAGAGATGTGAGGAGAAGAATGGTGAATcgggagaggaagaagagaaggagaaggagaagaagaagatttatACAGATCCGGAGCTATTCTGCTGCGTTTTCCAGCCTGCAACCGCTGACGTTGACGCTAAATACATCGGCATTCGACGGCTTCTTCTTCGCCGGAAGGCTGAGGCTGGCATTCTCCGCCGTATAGACTGGAGAAGCAACGGGAAGGGTTATGTAGCCTACCGAAGTTACATATCTAGGCCAAGCGATTGGGAAAGTTCACGTGTCCATAGCCTCCAAGTCACTCCCGGAAACAGTGGGCGATGGATTGCACCGCCAAGTCCACTGTCCCGTTGGTCTGAGGTGGACAGCTTGAATTCTTTCCGGGAATTGCAAAGTGCCAATCCAGCATCTAATCATAGAACAAGTTTTGCTTCTACTGCAAGTGATAATGAACGTCAACGTCATCGTGGGGCTGAGGCTGCCTATTCTTTTGTAGGAATGCATTGCATCTTTGATCAAGCCAAAGCCTCAGTTACCGTTTTGAAGTTTGGGCACATGAGTTCTGATCTACTTGCATATGGGGCATCGGATGGAACCTTGACAGTATGTACTGTCTCTGATAACCCTTCAGTCATCAAACAATTAACTGGGCATTCCAAAGATGTTACAGATTTTGATTTTTCATCAAACAATCAGTACATTGCATCGTCTTCATTGGATAAAACTGTGAGAGTATGGGAGATAGCTAAAGGTATTTGCATACGGGTGATATATGGAGTTTCTTCACAATTGTGTATTCGTTTTCACCCTGTAAATAACAACTTTCTTTCTGTTGGCAATGCAAACAAAGAAATCAATGTATTCAATTTCAGCACTGGAaggataattaataaaacagTATTTGACACTGAAGTTACCTCTATGGACCACGATCATACGGGTCAACTCATATTTTGTGGCGATGGACAAGGTTGTGTATACTCAGTGACTATGAACTCTCACACTGGGATCTTATCTCGTTCTCATCGTCATCGGAGTAGCAGCTGGCACAAATCTCCTGTCACAACACTGCAGTATCGAAGTTTCTCTCTGCTGGCTGGAGGACCTGTGTTGCTCGCATGTACAAAGGATGGAAATCTGTCTTTCTTCAGTGTGGCTTTGGAGATAAATGGTTATTTAACTCTTCGCTGCTCACTCAAATTAACTTCTCGCATTCACAACATTCAAGCTTCTTTCTGTCCTCTTCTTTCCCTTGAGAAAGGAGAATTCATTGTTGCTGGAAGTGAGGACTCGAATGTCTATTTCTATGATTTAACGCGGCCAAAGAATACATGCGTAAACAAGTTACAGGGTCATCGCTTTCCAGTAATAGGTATTGCATGGAACCATGGAGAAAACTTGCTGGCATCATCTGATTTGTATGGCACAGTGATCGTATGGAAGAGAGCAAGAACTGATCAATTCAAGAATCTATAG 1476 0.4194 MAEQRCEEKNGESGEEEEKEKEKKKIYTDPELFCCVFQPATADVDAKYIGIRRLLLRRKAEAGILRRIDWRSNGKGYVAYRSYISRPSDWESSRVHSLQVTPGNSGRWIAPPSPLSRWSEVDSLNSFRELQSANPASNHRTSFASTASDNERQRHRGAEAAYSFVGMHCIFDQAKASVTVLKFGHMSSDLLAYGASDGTLTVCTVSDNPSVIKQLTGHSKDVTDFDFSSNNQYIASSSLDKTVRVWEIAKGICIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEINVFNFSTGRIINKTVFDTEVTSMDHDHTGQLIFCGDGQGCVYSVTMNSHTGILSRSHRHRSSSWHKSPVTTLQYRSFSLLAGGPVLLACTKDGNLSFFSVALEINGYLTLRCSLKLTSRIHNIQASFCPLLSLEKGEFIVAGSEDSNVYFYDLTRPKNTCVNKLQGHRFPVIGIAWNHGENLLASSDLYGTVIVWKRARTDQFKNL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0770 491 SUPERFAMILY WD40 repeat-like 172 483 IPR036322 GO:0005515
Sto2g0770 491 ProSitePatterns Trp-Asp (WD) repeats signature. 234 248 IPR019775 -
Sto2g0770 491 MobiDBLite consensus disorder prediction 133 148 - -
Sto2g0770 491 MobiDBLite consensus disorder prediction 1 23 - -
Sto2g0770 491 SMART WD40_4 442 481 IPR001680 GO:0005515
Sto2g0770 491 SMART WD40_4 292 330 IPR001680 GO:0005515
Sto2g0770 491 SMART WD40_4 398 437 IPR001680 GO:0005515
Sto2g0770 491 SMART WD40_4 208 247 IPR001680 GO:0005515
Sto2g0770 491 SMART WD40_4 340 384 IPR001680 GO:0005515
Sto2g0770 491 SMART WD40_4 166 204 IPR001680 GO:0005515
Sto2g0770 491 SMART WD40_4 250 289 IPR001680 GO:0005515
Sto2g0770 491 Pfam WD domain, G-beta repeat 212 246 IPR001680 GO:0005515
Sto2g0770 491 Pfam WD domain, G-beta repeat 444 481 IPR001680 GO:0005515
Sto2g0770 491 PANTHER WD REPEAT-CONTAINING PROTEIN 13 16 485 - -
Sto2g0770 491 Gene3D - 136 261 IPR015943 GO:0005515
Sto2g0770 491 Gene3D - 262 406 IPR015943 GO:0005515
Sto2g0770 491 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 481 IPR001680 GO:0005515
Sto2g0770 491 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Sto2g0770 491 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 248 - -
Sto2g0770 491 Gene3D - 407 490 IPR015943 GO:0005515
Sto2g0770 491 MobiDBLite consensus disorder prediction 133 154 - -
Sto2g0770 491 PANTHER WD REPEAT PROTEIN 26-RELATED 16 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0770 Sto-Chr2 6601588 6607044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0770 187 312 Miscellaneous Gene Families AT5G08390 26.357 1.34e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0770 K24739 - gmx:100792346 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0770 2 6601588 6607044 Sto2g0770 2 6601588 6607044 ECH