Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0633 ATGGAGCGAGCAGGGAGTTGGAGTTATTTAGCGAGACGGCGTTCGTTGAGCATATCATCAAGTCGTAGAAGCCAAAATTACAACGCACATAATGATAATAGTGAGAATGATATAGCGTTTCAGAAGTTGGAGATATTGGGGATCGAGCTCTTCAATTTGTTCCGTGATGGGCTTGCTGCTCCAAAATCCATTACAGAGCATCCTAAATTGCCTTTTTCCAATTCTAATTACTCTGTTATGCCATTACCGCCTCATACCTTATCACCTCCTTCTCAAGAATCAAATCAAGAACATGGTGAAGCGTTGTTGCCACAATTTCTTGACTATGCTTCATGTCTTGTTCATTTAGCAGTTTTTGGGATTCTTGGGAACAAGAGGAAGACAAGAGACAGCTTGGAAGTTCAGGACACcgtgtttattattttattttcgagaagaagaagagagggagagaaagcgATATCTTCTCAGGTGCTATTCATCACAAAGAAAGAAATGGCGGAGGCAGAAGAATTGAAGGAGAAGGGCGAATCGAAGAGTATGGAAGAAAGAGCATTCAAATTCAACATTGAGGCACCTGAATTTGTACCGAGATCGCATACCCAGATGCCGATTTCGGGGTATTTCTACCCTTGCTTCCAGTTTCTTGGTGGGGCTGGTGATTCTGATTGGTATTATTCAGTTGATGATCAGGAGATTGCTACGCCTATGCCTACTACTACTTGTTCGGTTCCCAGTACGGAGGTAATGCCCAATTGTTCGAAGAATGTCCTCACTCAGGATCTTCAGCAAAAGATCGTCAAACAGGTGGAGTATCAATTCAGTGACATGAGTTTGCTAGCAAATGAATCTTTCCAGAAACAAATTAATAGAGATCCAGAAGGCTACGTTCCAATATCAATTATTGCTTCCTCCAAAAAGATCAAGTCCCTCATTAGCAACAATACTCATCTGCTTACCCAagcactctcttcatcttcaaaACTTAGTTTAAGCGCTGACAACAAGAAGGTTAAACGTAAACACCCCTTCACTGAAAAGGAGAAGGAGGAATTGCAGTCCCGTACGGTTGTGGCAGAGAATTTACCTGAAGATCATTCTTTTCAAAATCTTCAGAAAATATTTAGTGTTGTTGGAAGTTTGAAAACACTCAGAATATGCTATCCCCACGATTTATCTACGTCACCCCGTCTAAAAGGTGATATATTCATCAGTAATAagCTCCATGCTCTTGTGGAGTATAAGACTACAGATCTAGCCGAGAAAGCTGTTGAGAAGTTGAATGATGAAAGGAATTGGAGGAAAGGGATGCGAGTGAGGATGCTGATTAGACGCACGCCAAGATCTGTTTTGAAGGGCAGAAAGTCAGAATTTGATGGGTTTCTAGATGATGATGAGATTTCAGATGCTGATTCTACTGGAGATTCTCCCCATCCAATCTGCAGTGATGTGAACAGTAGTGGTGACGAAAATCCGAATGCATATAAGAAAGGAGGATGGGGAAGAGGGCTTAGTAGCAAGGGCAGAGGATGTTCTCAAAGCTATATGGGACGTGGCCTTCTTGCTTCGCCACATCATCCCAGCAGCTTCGTCCAAAGTGAAGCTTCTCCAAGACAGAGTCCCAAGGGCCCAAGAATGCCGGATGGAACGAGAGGTTTCGCCATCGGCAGGGGCAAGCCGGTTAATCCTCCTGCTATAGCCAGTTAA 1707 0.4148 MERAGSWSYLARRRSLSISSSRRSQNYNAHNDNSENDIAFQKLEILGIELFNLFRDGLAAPKSITEHPKLPFSNSNYSVMPLPPHTLSPPSQESNQEHGEALLPQFLDYASCLVHLAVFGILGNKRKTRDSLEVQDTVFIILFSRRRREGEKAISSQVLFITKKEMAEAEELKEKGESKSMEERAFKFNIEAPEFVPRSHTQMPISGYFYPCFQFLGGAGDSDWYYSVDDQEIATPMPTTTCSVPSTEVMPNCSKNVLTQDLQQKIVKQVEYQFSDMSLLANESFQKQINRDPEGYVPISIIASSKKIKSLISNNTHLLTQALSSSSKLSLSADNKKVKRKHPFTEKEKEELQSRTVVAENLPEDHSFQNLQKIFSVVGSLKTLRICYPHDLSTSPRLKGDIFISNKLHALVEYKTTDLAEKAVEKLNDERNWRKGMRVRMLIRRTPRSVLKGRKSEFDGFLDDDEISDADSTGDSPHPICSDVNSSGDENPNAYKKGGWGRGLSSKGRGCSQSYMGRGLLASPHHPSSFVQSEASPRQSPKGPRMPDGTRGFAIGRGKPVNPPAIAS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0633 568 PANTHER LA-RELATED PROTEIN 6C 166 562 - -
Sto2g0633 568 ProSiteProfiles La-type HTH domain profile. 256 348 IPR006630 -
Sto2g0633 568 PANTHER LUPUS LA PROTEIN-RELATED 166 562 IPR045180 -
Sto2g0633 568 Coils Coil 335 355 - -
Sto2g0633 568 Gene3D - 258 345 IPR036388 -
Sto2g0633 568 MobiDBLite consensus disorder prediction 478 492 - -
Sto2g0633 568 CDD RRM_La_like_plant 355 442 IPR034878 GO:0003723
Sto2g0633 568 Pfam La domain 266 324 IPR006630 -
Sto2g0633 568 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 446 IPR000504 GO:0003723
Sto2g0633 568 MobiDBLite consensus disorder prediction 462 568 - -
Sto2g0633 568 SUPERFAMILY "Winged helix" DNA-binding domain 258 344 IPR036390 -
Sto2g0633 568 Gene3D - 346 449 IPR012677 -
Sto2g0633 568 PRINTS Lupus La protein signature 269 286 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Sto2g0633 568 PRINTS Lupus La protein signature 295 310 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Sto2g0633 568 PRINTS Lupus La protein signature 327 340 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Sto2g0633 568 PRINTS Lupus La protein signature 349 365 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Sto2g0633 568 SUPERFAMILY RNA-binding domain, RBD 350 449 IPR035979 GO:0003676
Sto2g0633 568 SMART la 260 341 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0633 Sto-Chr2 5366374 5370963 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0633 K15191 - zju:107411195 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0633 2 5366374 5370963 Sto2g0633 2 5366374 5370963 ECH