Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0609 atgTCAACTACTAGGTTCCTTGATTTCCAATACAACCTCTCAAAGAGAAAGTATCTGCGGAATCCGTCTCGTCTGCTTTCCTCCCTGGACAGACTTAACTCCGGGTTGAAAACAATTTTCCAGCCAAACGTAGATGAGATGAAGAAGGTGTTTGACAAATTCGATTCCAACAGAGATGGGAAAATTTCTCAGCAGGAATACAAGGCCACCCTGAAAGCTCTAGCCATGGGAGGAGGGAACACGGTTCGCGAAGTTCCCGATATTTTCCGGGTGGTTGATCAGGACGGAGACGGTTTTATCAGTTTCAAGGAGTTCATGGAAGCTCAGAAGATGGGTGATGGGATTAGAACAGTGGATATAAAGAGTGCATTCAGGGCATTTGATAAGAATGGTGATGGGAAAATTACAGCAGAGGAAGTTCAGGATATGATGAGGAGGCTGGGAGAAAGTTGCAGCCATGAGGATTGCAGAAAAATGGTGATGGCAGTGGATACTGATGGGGATGGTATGGTTGATATGGATGAGTTCATGGTCATGATGACACAGTCCCTCAGACGTGGCTGA 564 0.4557 MSTTRFLDFQYNLSKRKYLRNPSRLLSSLDRLNSGLKTIFQPNVDEMKKVFDKFDSNRDGKISQQEYKATLKALAMGGGNTVREVPDIFRVVDQDGDGFISFKEFMEAQKMGDGIRTVDIKSAFRAFDKNGDGKITAEEVQDMMRRLGESCSHEDCRKMVMAVDTDGDGMVDMDEFMVMMTQSLRRG 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0609 187 ProSiteProfiles EF-hand calcium-binding domain profile. 80 114 IPR002048 GO:0005509
Sto2g0609 187 ProSiteProfiles EF-hand calcium-binding domain profile. 151 186 IPR002048 GO:0005509
Sto2g0609 187 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 183 - -
Sto2g0609 187 CDD EFh 119 181 IPR002048 GO:0005509
Sto2g0609 187 SMART efh_1 155 183 IPR002048 GO:0005509
Sto2g0609 187 SMART efh_1 84 112 IPR002048 GO:0005509
Sto2g0609 187 SMART efh_1 119 147 IPR002048 GO:0005509
Sto2g0609 187 SMART efh_1 46 74 IPR002048 GO:0005509
Sto2g0609 187 SUPERFAMILY EF-hand 44 182 IPR011992 -
Sto2g0609 187 Pfam EF-hand domain pair 46 108 IPR002048 GO:0005509
Sto2g0609 187 Pfam EF-hand domain pair 119 180 IPR002048 GO:0005509
Sto2g0609 187 ProSitePatterns EF-hand calcium-binding domain. 164 176 IPR018247 -
Sto2g0609 187 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Sto2g0609 187 ProSitePatterns EF-hand calcium-binding domain. 128 140 IPR018247 -
Sto2g0609 187 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Sto2g0609 187 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Sto2g0609 187 Gene3D - 116 185 - -
Sto2g0609 187 PANTHER CALCIUM-BINDING PROTEIN CML34-RELATED 1 183 - -
Sto2g0609 187 Gene3D - 5 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0609 Sto-Chr2 5167281 5167844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0609 1 183 EF-hand Containing Proteins AT2G15680 53.723 9.48e-66 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0609 K13448 - gmx:100803158 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0609 2 5167281 5167844 Sto2g0609 2 5167281 5167844 ECH