Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0553 atggaaAGGCTACTCAAATTGAATAGACTCATGCCGAGATGGAAGGTTCTGGAGTCGCGCTCTCGTTTCTTGATGTTCGTGCTTGAAGGCACCACCGAAAGCTTCGTCCGTGTTCTTCTCCGCATTATGACAGAGGAGGTTCCTACCATTGCTATCCACGAAGTCGTCATTGAGACAAATTCCTCCTTCCTCAGCGATTCCTTCTTGGCCCAACGTCTCAGATTCATCCCCCTCACCAGTGACCTCGCAAACCTAATGTACTACTCCACTGAATGTCCCAACTGCAACGGCCGAGGCTACTGTCACCTCTGCTCCGTCGAGTTCCGCCTCAGTGCCAAATGCGTCGCCGGAGATGTTACCAGCAAGGATCTCGTCACTTCTAATCCCTCCGTTCTTCCCTTCGATTTCTTCGACCCTACGGGGACTGCCATTGTGAAGTTAAAACCTGGAGAGGAGCTGACGCTGAAGGCAATAGCTAGGAAGGGAATTGGCAAGGACCACATAAAATGGTCACCACTAGCTGCAACAAGTGCAAAATACTTTTGTCCGTCAGACATTAGAATAAATGAAGAATTGATGGAAACATTAACACTTGAGCAGAAAAAACAATGGGTTGCTAGTTATCCTACCGATTTGTTTCAAGTAGATCCTCAGACACAAAAGGTTGTGCTTTGTCGTCCAGGAAACGGTTATCACAATATGCCTTTGAATCCAGAAGCTAGGGGGGTTATTGAAGTGTTTGAGAAAAAGGATACTTTCGTATTCACAGTAGAAACCACTGGCGCTCTTAAGGCTTCTCAGTTACTAATGAATGCCTTAGCAATCCTCAAACGGAAGCTGCTCTCATTCCGCGTATTGGAAGATCATTTTCTAGATCATGACTTAGCTGGTATAGACAAACTTGATAGTGAAAATTAA 918 0.4553 MERLLKLNRLMPRWKVLESRSRFLMFVLEGTTESFVRVLLRIMTEEVPTIAIHEVVIETNSSFLSDSFLAQRLRFIPLTSDLANLMYYSTECPNCNGRGYCHLCSVEFRLSAKCVAGDVTSKDLVTSNPSVLPFDFFDPTGTAIVKLKPGEELTLKAIARKGIGKDHIKWSPLAATSAKYFCPSDIRINEELMETLTLEQKKQWVASYPTDLFQVDPQTQKVVLCRPGNGYHNMPLNPEARGVIEVFEKKDTFVFTVETTGALKASQLLMNALAILKRKLLSFRVLEDHFLDHDLAGIDKLDSEN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0553 305 Gene3D - 15 283 IPR036603 GO:0006351|GO:0046983
Sto2g0553 305 SUPERFAMILY RBP11-like subunits of RNA polymerase 13 286 IPR036603 GO:0006351|GO:0046983
Sto2g0553 305 Gene3D - 49 170 IPR036643 -
Sto2g0553 305 Pfam RNA polymerase Rpb3/RpoA insert domain 55 171 IPR011262 GO:0003899|GO:0006351|GO:0046983
Sto2g0553 305 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 13 287 IPR022842 GO:0003899|GO:0006351
Sto2g0553 305 PANTHER DNA-DIRECTED RNA POLYMERASE 11 294 - -
Sto2g0553 305 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 26 280 IPR011263 GO:0003899|GO:0006351
Sto2g0553 305 PANTHER BNAA09G08480D PROTEIN 11 294 - -
Sto2g0553 305 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 48 172 IPR036643 -
Sto2g0553 305 Gene3D - 183 250 - -
Sto2g0553 305 SMART rpoldneu2 23 286 IPR011263 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0553 Sto-Chr2 4719213 4721600 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0553 K03011 - bvg:104904974 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0553 2 4719213 4721600 Sto2g0553 2 4719213 4721600 ECH