LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto2g0426	ATGGAtcacattcttcttcttcatcttcatcttgtcaTAGCAGCTCTCATGGCGGCTGCTTCTTCCTTTCATTCATGTGAAGCAGCAGCTGTTTCCAAAGGATCCTTTGAAGACAACTTCAGTATCATGTGGTCGGAGAATCATTTCACTACCTCCCAGGATGGCCAGACCTGGTTCCTATCTCTCGACAAAGAAACAGgATGTGGGTTCCAAACTAAACAACGATATAGATTTGGATGGTTCAGCATGAAGCTGAAGCTGGTAGGAGGTGATTCTGCTGGTGTTGTCACAGCTTACTATATGTGCACAGAAAATGGAGCGGGACCAGAAAGAGACGAGCTTGATTTTGAGTTCTTGGGGAACAGAACAGGGGAGCCTTACTTAATACAGACAAATGTGTACAAGAATGGGACGGGTGGGCGTGAGATGAGACATGTCCTTTGGTTCGATCCCACTCAAGATTACCACTCCTACTCTATTCTCTGGAACGAACACCAAATAGTGTTTTTTGTGGACAAGGTTCCCATAAGGGTGTTCAAGAACAATGGGAAGGCCAACAACTTCTTCCCCAATGAGAAGCCAATGTACTTATTTTCAAGCATATGGAATGCAGATGATTGGGCCACAAGAGGTGGGCTTGAGAAAACCAATTGGAAGTTAGGCCCATTTGTGTCATCCTACAAGGACTTCAGTGTGGATGGGTGCCTATGGGAAGACCCATTCCCTGCATGTGTGTCCACCACTACCAAGAATTGGTGGGATCAGTATGATGCTTGGCATCTCTCTGATGACCAGAACAAGGACTATGCTTGGGTCAAGAGAAACCTTGTCATCTATGATTATTGTGATGACTCTGAAAGATATCCTACGTTGCCTGAGGAGTGCTCTTTGAGTCCTTGGGATtga	906	0.4393	MDHILLLHLHLVIAALMAAASSFHSCEAAAVSKGSFEDNFSIMWSENHFTTSQDGQTWFLSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPERDELDFEFLGNRTGEPYLIQTNVYKNGTGGREMRHVLWFDPTQDYHSYSILWNEHQIVFFVDKVPIRVFKNNGKANNFFPNEKPMYLFSSIWNADDWATRGGLEKTNWKLGPFVSSYKDFSVDGCLWEDPFPACVSTTTKNWWDQYDAWHLSDDQNKDYAWVKRNLVIYDYCDDSERYPTLPEECSLSPWD	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto2g0426	301	SUPERFAMILY	Concanavalin A-like lectins/glucanases	36	299	IPR013320	-
	Sto2g0426	301	CDD	GH16_XET	32	295	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Sto2g0426	301	Gene3D	-	22	298	-	-
	Sto2g0426	301	PIRSF	EndGlu_transf	1	300	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Sto2g0426	301	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	248	295	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Sto2g0426	301	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	113	123	IPR008263	GO:0004553\|GO:0005975
	Sto2g0426	301	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	24	227	IPR000757	GO:0004553\|GO:0005975
	Sto2g0426	301	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	11	300	-	-
	Sto2g0426	301	Pfam	Glycosyl hydrolases family 16	37	219	IPR000757	GO:0004553\|GO:0005975
	Sto2g0426	301	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	11	300	IPR044791	GO:0004553
	Sto2g0426	301	PRINTS	Glycosyl hydrolase family 16 signature	68	86	IPR008264	GO:0004553\|GO:0005975
	Sto2g0426	301	PRINTS	Glycosyl hydrolase family 16 signature	129	142	IPR008264	GO:0004553\|GO:0005975
	Sto2g0426	301	PRINTS	Glycosyl hydrolase family 16 signature	147	164	IPR008264	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto2g0426	Sto-Chr2	3695650	3697589	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto2g0426	11	295	Glycoside Hydrolase	AT5G13870	50.877	8.40e-98	288

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto2g0426	K08235		-	gmx:100793766	569.311

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto2g0426	2	3695650	3697589	Sto2g0426	2	3695650	3697589	ECH