Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2165 ATGATCAAAAAGAGAAAGCGCGTGCCCTTCACTCTCTGCCACGATCCCCTGTACTTGAAATTGTCTTCTTCCTTGCTTACCACCAAAACCCCTCTTCGCTCCTCTTCCTTCAAACAAGACACCTACCTCCTCTCCCACCTCAAATCCTCCCAACAAAAAGCCCTTCAAAACCTCAAATCCAACCTCGCCAATAATTCCTCCTCTGAACCTTCCATGTGGGGTATCCCTCTCCTCCAATCGGACCCCAGAGCTGACGTCATCCTCCTCAAATTCCTCCGAGCCAGAGACTTCCGAGTCCAAGACACTCTCAACATGCTCCTCAAGTCCCTCGCTTGGAGGAAGGAGTTCGGAGCAGACGACGTCGTTGAGGAGGACTTGGGGTTTAAGGAACTTGAAGGGGTTGTGTCCTACATGCAGGGGTATGACAGAGAGGGACACCCTGTGTGCTACAATGCTTATGGGGTTTTCAAGGACAGAGAGATGTATGAGAGGGTATTTGGGGACGAAGAGAAGCTTAAGAAATTTCTGAGATGGAGAGTTCAAGTTTTGGAGAAAGGGATAAAGCTGCTTCATTTGGAAGCAGGTGGGGTTAATGCTTTGGTTCAGGTCACTGATCTTAAGGACATGCCTAAGAGAGAGCTTAGGGTGGCTTCTAATCACATCCTCTCTCTGTTTCAAGACAATTACCCTGAAATGGTGGCTCGTAAGATTTTCATCAATGTCCCTTGGTACTTCACCATGTTGTATTCCATGTTCAGTCCTTTTCTGACTCAACGAACTAAGAGCAAGTTTGTGATCTCTAAGGAAGGAAATGTTGCGGACACACTCTACAAATATATAAGGCCAGAGGACATTCCAGTTCAGTATGGAGGACTGAGTCGGACCATTGATTTGCAGAATGGTCCCCCAAAACCTGCTTCAGAGTTCACTATCAAAGGTGGAGAGAAAGTTAACATACAAATTGAAGGAATTGAGGAAGGAGCAAGAATCACATGGGACATAGTGGTGGGAGGGTGGGAGTTAGAGTACAGTGCAGAGTTTATTCCGAGCGGAGAAGGAAGGTACAGCATAGCAGTAGAGAAGGTGAGGAAGATAGGAGCATCAGAAGAAGCCATTCATAACTCATTCACAGCAAAAGAAGCAGGAAACATGGTACTATGTGTTGATAACACTTGCTCTCGCAAGAACAAACTTGCAGCATATCGCTACAATACTCGTGGTGTAATAATGTAA 1233 0.4615 MIKKRKRVPFTLCHDPLYLKLSSSLLTTKTPLRSSSFKQDTYLLSHLKSSQQKALQNLKSNLANNSSSEPSMWGIPLLQSDPRADVILLKFLRARDFRVQDTLNMLLKSLAWRKEFGADDVVEEDLGFKELEGVVSYMQGYDREGHPVCYNAYGVFKDREMYERVFGDEEKLKKFLRWRVQVLEKGIKLLHLEAGGVNALVQVTDLKDMPKRELRVASNHILSLFQDNYPEMVARKIFINVPWYFTMLYSMFSPFLTQRTKSKFVISKEGNVADTLYKYIRPEDIPVQYGGLSRTIDLQNGPPKPASEFTIKGGEKVNIQIEGIEEGARITWDIVVGGWELEYSAEFIPSGEGRYSIAVEKVRKIGASEEAIHNSFTAKEAGNMVLCVDNTCSRKNKLAAYRYNTRGVIM 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2165 410 Gene3D GOLD domain 304 404 - -
Sto1g2165 410 Gene3D - 123 303 IPR036865 -
Sto1g2165 410 ProSiteProfiles GOLD domain profile. 273 410 IPR009038 -
Sto1g2165 410 CDD SEC14 128 292 IPR001251 -
Sto1g2165 410 Gene3D - 41 115 - -
Sto1g2165 410 SMART CRAL_TRIO_N_2 84 109 IPR011074 -
Sto1g2165 410 Pfam CRAL/TRIO, N-terminal domain 45 107 IPR011074 -
Sto1g2165 410 PANTHER PATELLIN-1 21 406 IPR044834 GO:0008289
Sto1g2165 410 SMART sec14_4 130 294 IPR001251 -
Sto1g2165 410 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 308 402 IPR036598 -
Sto1g2165 410 SUPERFAMILY CRAL/TRIO domain 129 296 IPR036865 -
Sto1g2165 410 PANTHER PATELLIN-6 21 406 - -
Sto1g2165 410 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 124 297 IPR001251 -
Sto1g2165 410 SUPERFAMILY CRAL/TRIO N-terminal domain 30 125 IPR036273 -
Sto1g2165 410 Pfam CRAL/TRIO domain 132 291 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2165 Sto-Chr1 29863164 29866594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2165 88 286 Acyl Lipid Metabolism Gene Families AT1G55840 27.700 2.67e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2165 - - qsu:112015166 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0448 6 4942233 4944324 Sto1g2165 1 29863164 29866594 CCT
Sto1g2165 1 29863164 29866594 Sto1g2165 1 29863164 29866594 ECH