Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g1607 ATGGGTTTGATTTCTGGGCTTTTTCTGGGCATAGCGTTGGGCATCGCTTTGATGTTTGGATGGAAAAATATGATGAGGTACCGAAGCGGCAAGCGAATTGCCAAGGCAGCAGATATTAAACTCCTTGGATCCCTTAACAGAGATGATTTAAAGAAAATCTGTGGCGATAGTTTTCCTGAATGGATATCTTTTCCAGTATATGAACAGGTAAAATGGCTAAACAAGGAGCTGACCAAACTGTGGCCATATGTAGCAGAAGCAGGATCTATGGTGATCAGAGAATCTGTTGAACCACTACTTGAAGAGTACAGACCTACTGGAATTACCTCTTTGAAGTTCAGCAAGCTGTCGCTTGGAAATGTCGCTCCGAAGATTGaagGTATTCGTGTTCAGAGTCTTAAGAAAGGCCAAATCATAATGGACATTGATCTCCGATGGGGAGGTGATCCTAGCATTATTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATCCCCATTCAGTTGAAGGACCTCCAAGTTTTCACCATTGCCCGTGTTATCTTCCAACTTGCTGAAGAGATTCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTAGCTGAGCCAAAGCCTAGGATTGATTACACTCTGAAGGCTATTGGTGGAAGTTTGACAGCAATTCCTGGATTATCAGATATGATTGATGATACTGTGAACACAATTGTTACTGATACGCTCCAATGGCCTCATAGGATTGTTGTTGAACTTGGGGGTATACCTGTTGATAGGAGTGAACTGGAGCTTAAACCACAAGGAAAGCTTACAGTGACAGTAGTAAAAGCCAATGATTTGAAGAATAAGGAAATGATTGGGAAGTCTGATCCTTATGTAGTTGTGTATATTCGACCCCTATTTAAGGTTAAAACCAAGGTTATCAATAACAACCTGAACCCTGTTTGGGATCAGACATTTGAGTTGATTGCAGAAGACAAGGAAACCCAGTCACTTATTGTTGAGATCTTTGATAAAGATATTGGGCAAGATAAGCGATTGGGAATAGCAAAATTACCCCTAATTGATCTGGTAGCAGGAACTGAAAAGGAATTTGAATTGAGGCTGCTGTCATCGCTTGACACACTGAAGGTAAAAGATAAAAAGGACCGAGGATCCTTGACAATAAAGGTCCTGTACCATGAATTCAACAAAGAAGAGCAGTTAGCTGCTctagaagcagagaagaagatactagaagaaaggaagaagcTGAAAGAGGCTGGAGTTATAGGTAGCACTATGGATGCAATAGATGGAGCGGCATCACTTGTGGGGTCCGGTGTTGGACTGGTCGGCACCGGTGTTGTTGCTGGTGCTGGACTCGTGGGAAGCGGCATCGGTGCCGGAGCCGGGCTTGTTACCAGCGGTTTTGGAGCCGTCAGTAGCGGGCTGACCAAGGCTGGAAAGTTCATGGGTAGGACTATCACTGGGAATAGTGGCTCCAGAAGGAGTGGTTCATCTACTCCAGTCAATAATGCTCAGGAAAATGGTGGTGGTGCAAAGCCTCTGTGA 1542 0.43 MGLISGLFLGIALGIALMFGWKNMMRYRSGKRIAKAADIKLLGSLNRDDLKKICGDSFPEWISFPVYEQVKWLNKELTKLWPYVAEAGSMVIRESVEPLLEEYRPTGITSLKFSKLSLGNVAPKIEGIRVQSLKKGQIIMDIDLRWGGDPSIILAVEAALVASIPIQLKDLQVFTIARVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAIGGSLTAIPGLSDMIDDTVNTIVTDTLQWPHRIVVELGGIPVDRSELELKPQGKLTVTVVKANDLKNKEMIGKSDPYVVVYIRPLFKVKTKVINNNLNPVWDQTFELIAEDKETQSLIVEIFDKDIGQDKRLGIAKLPLIDLVAGTEKEFELRLLSSLDTLKVKDKKDRGSLTIKVLYHEFNKEEQLAALEAEKKILEERKKLKEAGVIGSTMDAIDGAASLVGSGVGLVGTGVVAGAGLVGSGIGAGAGLVTSGFGAVSSGLTKAGKFMGRTITGNSGSRRSGSSTPVNNAQENGGGAKPL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g1607 513 SMART C2_3c 265 362 IPR000008 -
Sto1g1607 513 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 508 IPR045050 GO:0008289
Sto1g1607 513 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Sto1g1607 513 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 508 - -
Sto1g1607 513 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Sto1g1607 513 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 391 IPR035892 -
Sto1g1607 513 MobiDBLite consensus disorder prediction 484 505 - -
Sto1g1607 513 Pfam C2 domain 264 360 IPR000008 -
Sto1g1607 513 Gene3D C2 domain 259 417 IPR035892 -
Sto1g1607 513 CDD C2 266 360 - -
Sto1g1607 513 Coils Coil 391 418 - -
Sto1g1607 513 MobiDBLite consensus disorder prediction 484 513 - -
Sto1g1607 513 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Sto1g1607 513 PRINTS C2 domain signature 281 293 IPR000008 -
Sto1g1607 513 PRINTS C2 domain signature 306 319 IPR000008 -
Sto1g1607 513 PRINTS C2 domain signature 328 336 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g1607 Sto-Chr1 23905533 23916802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g1607 266 350 Lipid Metabolism Gene Families AT4G00700 44.706 2.61e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g1607 - - gmx:100777838 764.607