Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0600 TTGGAAGGAAGCGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCCCCTGATTATCCCTATAAACCTCCTGGAATCAGCATGACTACACCTAATGGACGCTTCATGACACAGAAAAAGATCTGCTTGTCCATGAGTGACTTTCATCCAGAAAGTTGGAATCCGATGTGGTCTGTCTCAAGCATACTTACAGGCCTTCTTTCATTCATGATGGACAGCAGTCCAACTACTGGCAGTGTGACCACTACTACTGCTGAGAAGCAGCGTCTAGCAAAGGCTTCCCTTGCTTTCAATTGTAAAAATGCAACATTCAGGAAAATGTTCCCCGAGTATGTTGATAAGTACAACCAGGAGCAGCTTTCTGAGCAAGTCGCATCCGAGCAAGTCGCATCACAGGCGGCATCTCACAACAAAAGTTCAAGGCCCATGTTGAGAAAGGTTTTGGAGTCGTCTACAGGAGAAGACATGAAAATAGTGGATGAATTGAAAGATACATGGAGGCTGCGTTCTATCTATGGGCTGATTTTACTCCTTTGTGTCTTTATTGCCAACTTCTTGATGGTAAATGCTAAGAAGTTACATGCTTGTGGTGTTCCTACAAAATCTAGTTTTGAGGTTTTGTCTTCTGGTGTTGTTGGTTAG 657 0.4307 LEGSEGTPFAGGYYYGKIKFPPDYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDSSPTTGSVTTTTAEKQRLAKASLAFNCKNATFRKMFPEYVDKYNQEQLSEQVASEQVASQAASHNKSSRPMLRKVLESSTGEDMKIVDELKDTWRLRSIYGLILLLCVFIANFLMVNAKKLHACGVPTKSSFEVLSSGVVG 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0600 218 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 122 IPR000608 -
Sto1g0600 218 CDD UBCc 1 77 IPR000608 -
Sto1g0600 218 SUPERFAMILY UBC-like 2 116 IPR016135 -
Sto1g0600 218 Pfam Ubiquitin-conjugating enzyme 2 83 IPR000608 -
Sto1g0600 218 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 J2 1 192 - -
Sto1g0600 218 Gene3D Ubiquitin Conjugating Enzyme 1 139 IPR016135 -
Sto1g0600 218 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 192 - -
Sto1g0600 218 SMART ubc_7 1 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0600 Sto-Chr1 5724223 5726269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0600 1 193 Miscellaneous Gene Families AT1G17280 64.249 1.32e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0600 K04554 - gmx:100778181 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0600 1 5724223 5726269 Sto1g0600 1 5724223 5726269 ECH