Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0510 atggccCTTGCAAGAGAAATCATGGGTTCTTCTTCTCTGATTGAAAGATCATCTTTTgtttcatcaccaAAGCAGAATCATCTAGTGGTAAGCCCTTTTGTGGTGCCATTGGAAGTTAGGTTGAGGAAgtctttgaagaagaagaatactGTAGCAGCAATCAGTGAGGATTTGGTgaaatcttcttcttcatcatcatcatcatcatcttcttctgtGGCTGCAGAGAAAGCAGTGAGGTTCAAGGTTAGAGCTGTAGTGACTGTTAAGAACAAGATCAAAGAGGATTTCAAAGAGACCATTGTGAAGCATTTGGATGCCATCACTGACAGAATTGGGAGAAATGTTGTTTTGGAACTTGTCAGCACTGAGATTGACCCAAAAACAAAAGGGCCAAAGAAGAGCAATGAAGCTGTGCTACAAGATTGGTCAAAGAAATCAAATGTGAAAGCAGAGAGAGTGAATTACACAGCAGAGTTCACAGTGGACTCTGAATTTGGAATCCCAGGAGCTATCACAATCACAAACAAACACCAGAAAGAGTTCTTCATTGAAAGCATCACCATTGAAGGATTTGCTTGTGGTCCTGTTCATTTCCCCTGCAATTCATGGGTTCAAGCCAGAAAGGATCATCCTGCAAAAAGAATCTTTTTTGCCAACAAGCCATATTTGCCCCATGAGACACCTGCTGGTCTTAGATTTTTGAGGGAGAAGGAGCTGAGAAACCTAAGAGGTGATGGCACAGGAGTTAGGAAATTATCAGACAGAATTTATGACTATGCCACTTACAATGATCTGGGAAATCCAGACAAAGGGGTTGATCTAACTAGACCAGTACTCGGAGGCTCCGAAAAGTATCCGTATCCACGACGGTGTCGTACCGGCCGTGTTCCTAGCGAGACAGATATGAATGCTGAGAGCCGAGTGGAGAAGCCATTCCCAATGTATGTTCCAAGAGATGAAAGATTTGAGGAGTCAAAGCAGAACACATTCACAATCAAGAGGTTGAAGGCAGTGCTTCATAACTTGATCCCTGGCTTGAAGGCTAGCCTCTCTGCAAATAACCATGACTTCAATGAATTCAAAGACGTTGATGGTCTCTATAGTGAAGGCCTCCTCATCAAGTTGGGCTTGCAAGATGAAGTTCTCAAGAAGATCCCTCTTGTCAGAAAAATCCATGAGTCTAGCCAAGGCCTTCTCAAGTATGACACTCCAAAGGTTATTTCAAAGGACAAATTTGCTTGGCTGCGAGATGACGAATTTGCCCGTCAAGCAATTGCCGGAATTAACCCTGTGAATATTGAGAAGCTTAAGGCTTTCCCACCTGTGAGCAAGCTTGACCCTAAAGTGTATGGCCCTCAAGAGTCTGCCCTTAAAGAAGAGCACATTTTAGGTCAACTTAATGGCATGACTGTTCAACAGGCTATAGAGGAAGATAAGCTGTTTATCATAGACTACCATGACATCTACCTCCCTTTTCTTGAAGGGATCAATGCCCTTGATGGTAGAAAGTCATATGCTACTCGTACCGTCTTTTTCTTGACACCCCTCGGCACTCTCAAGCCTATTGCTATAGAGCTCAGCCTCCCGCTGGCCGGACCGAGTTCCCGATCAAAGCGTGTGGTCACTCCCCCGGTCGATGCTACTACCAATTGGATGTGGCAACTTGCCAAGGCTCATGTTTGTTCCAACGATGCTGGCGTGCATCAACTTGTGAACCACTGGCTACGCACACATGCTTGTATGGAACCATTTATATTGGCTGCACATAGGCAATTGAGTGCAATGCATCCTATTTTCAAACTATTGGATCCTCACATGAGGTACACATTGGAGATCAATACCTTGGCTCGCCAAAGCTTGATCAACGCCGATGGAATCATCGAGTCTTGTTTCACTCCCGGTCGCTATTGCATGGAAATAAGTTCCGCCGCTTACAAGAACTTCTGGCGCTTCGACATGGAGAACCTCCCGACCGATCTCATCCGCAGGGGAGTGGCAGTACCGGACCCAACCCAACCTCATGGTTTAAGGCTCCTAATAGAAGACTACCCTTATGCCACTGATGGACTCCTCATATGGTCCGCCATACAAAATTGGGTTCGAACCTATGTGGATCATTActacccaaacccaaacctaatCTCTGAAGACAAAGAGCTTCAAGCTTGGTATTATGAGTCCATCAATGTGGGCCATGCTGACCTTAAAAATGAATCTTGGTGGCCCACATTGAACACTAGTGACAACCTAGTCTCTGTCCTCACAACTTTGATTTGGATCGCATCGGCCCAACATGCGGCCCTTAACTTCGGTCAGTACCCTTACGGAGGGTATGTCCCCAATCGTCCTCCCTTGATGAGAAGACTAATCCCAGAAGAGACTGACCCAGAATATACCAATTTCCTAGCGGACCCACAAAAGTACTTCCTCAATGCATTGCCTAGCTTGTTGCAAGCCACAAAATTCATGGCCGTCGTCGACACGCTCTCGACCCACTCCCCGGACGAGGAGTACATCGGCGAGCGGCAACAACCCTCAATTTGGACCGGCGACGCCGAGATCGTCGACGCATTCTTCGGATTCTCAGCGGAGATCAGGCAAATTGAGAAGGAGATCGAGAACAGGAACAATGATCGGAGGCTGAGGAACCGGTGTGGGGCCGGAGTGTTGCCCTACGAGTTGCTTGCTCCTAGCTCAGAACCGGGTGTCACATGTAGAGGGGTTCCAAATAGTGTGTCTACATAA 2748 0.4494 MALAREIMGSSSLIERSSFVSSPKQNHLVVSPFVVPLEVRLRKSLKKKNTVAAISEDLVKSSSSSSSSSSSSVAAEKAVRFKVRAVVTVKNKIKEDFKETIVKHLDAITDRIGRNVVLELVSTEIDPKTKGPKKSNEAVLQDWSKKSNVKAERVNYTAEFTVDSEFGIPGAITITNKHQKEFFIESITIEGFACGPVHFPCNSWVQARKDHPAKRIFFANKPYLPHETPAGLRFLREKELRNLRGDGTGVRKLSDRIYDYATYNDLGNPDKGVDLTRPVLGGSEKYPYPRRCRTGRVPSETDMNAESRVEKPFPMYVPRDERFEESKQNTFTIKRLKAVLHNLIPGLKASLSANNHDFNEFKDVDGLYSEGLLIKLGLQDEVLKKIPLVRKIHESSQGLLKYDTPKVISKDKFAWLRDDEFARQAIAGINPVNIEKLKAFPPVSKLDPKVYGPQESALKEEHILGQLNGMTVQQAIEEDKLFIIDYHDIYLPFLEGINALDGRKSYATRTVFFLTPLGTLKPIAIELSLPLAGPSSRSKRVVTPPVDATTNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACMEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINTLARQSLINADGIIESCFTPGRYCMEISSAAYKNFWRFDMENLPTDLIRRGVAVPDPTQPHGLRLLIEDYPYATDGLLIWSAIQNWVRTYVDHYYPNPNLISEDKELQAWYYESINVGHADLKNESWWPTLNTSDNLVSVLTTLIWIASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEETDPEYTNFLADPQKYFLNALPSLLQATKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFFGFSAEIRQIEKEIENRNNDRRLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVST 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0510 915 ProSitePatterns Lipoxygenases iron-binding region signature 2. 596 606 IPR020834 GO:0016702|GO:0046872
Sto1g0510 915 ProSitePatterns Lipoxygenases iron-binding region signature 1. 569 583 IPR020833 GO:0016702|GO:0046872
Sto1g0510 915 SUPERFAMILY Lipoxigenase 224 914 IPR036226 -
Sto1g0510 915 PRINTS Lipoxygenase signature 551 568 IPR013819 GO:0016702|GO:0046872
Sto1g0510 915 PRINTS Lipoxygenase signature 569 586 IPR013819 GO:0016702|GO:0046872
Sto1g0510 915 PRINTS Lipoxygenase signature 589 609 IPR013819 GO:0016702|GO:0046872
Sto1g0510 915 Pfam PLAT/LH2 domain 133 218 IPR001024 GO:0005515
Sto1g0510 915 PANTHER LIPOXYGENASE 34 914 IPR000907 GO:0016702|GO:0046872
Sto1g0510 915 CDD PLAT_LH2 81 220 IPR042057 -
Sto1g0510 915 PANTHER LIPOXYGENASE 3, CHLOROPLASTIC 34 914 - -
Sto1g0510 915 ProSiteProfiles PLAT domain profile. 97 219 IPR001024 GO:0005515
Sto1g0510 915 Gene3D - 224 326 - -
Sto1g0510 915 Pfam Lipoxygenase 232 898 IPR013819 GO:0016702|GO:0046872
Sto1g0510 915 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 222 915 IPR013819 GO:0016702|GO:0046872
Sto1g0510 915 Gene3D - 327 412 IPR027433 -
Sto1g0510 915 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 81 223 IPR036392 GO:0005515
Sto1g0510 915 PRINTS Plant lipoxygenase signature 189 207 IPR001246 GO:0016491
Sto1g0510 915 PRINTS Plant lipoxygenase signature 215 236 IPR001246 GO:0016491
Sto1g0510 915 PRINTS Plant lipoxygenase signature 254 270 IPR001246 GO:0016491
Sto1g0510 915 PRINTS Plant lipoxygenase signature 287 306 IPR001246 GO:0016491
Sto1g0510 915 PRINTS Plant lipoxygenase signature 355 376 IPR001246 GO:0016491
Sto1g0510 915 PRINTS Plant lipoxygenase signature 400 416 IPR001246 GO:0016491
Sto1g0510 915 PRINTS Plant lipoxygenase signature 439 458 IPR001246 GO:0016491
Sto1g0510 915 PRINTS Plant lipoxygenase signature 506 530 IPR001246 GO:0016491
Sto1g0510 915 PRINTS Plant lipoxygenase signature 827 841 IPR001246 GO:0016491
Sto1g0510 915 Gene3D - 548 914 - -
Sto1g0510 915 SMART LH2_4 81 220 IPR001024 GO:0005515
Sto1g0510 915 Gene3D - 413 546 - -
Sto1g0510 915 Gene3D PLAT/LH2 domain 67 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0510 Sto-Chr1 4713112 4719747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0510 1 914 Acyl Lipid Metabolism Gene Families AT1G17420 73.781 0.0 1432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0510 K00454 - gmx:100793614 1548.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0510 1 4713112 4719747 Sto1g0510 1 4713112 4719747 ECH