Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0505 ATGACGGTCTCTACTATAGCTTTATACGCTAGCCCACCGAGCAGTGTGTGTTCCACACCGCACCCTTGCCACATCAACGCCCACGGGTCTTACGATTTCGAATTGGGTTCGCGATCTTCGTCGTCGTCGTCTTCCGCGACGGCGTCCACATCTCAGAAGCCGGTGGTAATGAGTGGTCTCTCGTGCCTGTTCTCTTCGCCGACGGTGAAGCACGCTCCGCCGTTGTCGAGCTTCTCCGGCGCCGGCGAGGAGTTAGGTTCTCTGTGGCACGACAAGGGGGAGGAATTGAGCAGCTCCTTCTCCTATTCGTCGAGTAAACTCTGTGCGTCTTCTTGGAAGAGGGATCAGAGTCCCGTTTCGGTTTTCCAAGGTCCCGTTTCGTGTACGAGCAGTAGCGTTTCGGGCTCCGTGAGGAGTTCCCCAATGAGGATCGGATCCGATAGCTCGATTGGGTTTGTGAGGAACGCATTGGGGTCGTCGTGCTTGGATTACGATTCGCGAAGCTTCGATGTGCGTCGTGGTGATTTAGATGTGGGATCTTCTTCTCCATCGTCGTTGGTGGATGAATTGACCTTCAATTTGGAGGATACTTTTGTGGAGGGAAGTTTCGAGCCATACGCTAGAGAGTTGCTTGTGGGTGCTCAGTTGAGGCACAAGATCTTCTGTGAAGAATTCGTTATTAAGGCTTTCTATGAAGCAGAGAAAGCACACAGAGGGCAGaTGCGAGCTTCTGGTGATCCGTATTTGCAGCATTGTGTTGAAACAGCAGTTCTTCTTGCTTTGATTGGTGCCAATTCCACAGTTGTTGCTGCAGGGCTTTTGCATGATTCACTTGATGATTCATTTCTGACGTATGATTACATATTTGGGGCATTTGGTGCTGGTGTTGCTGATTTAGTTGAAGGGGTTTCCAAGCTAAGTCACTTGAGCAAGCTTGCGCGGGAGAGTAATACAGCTAGCAAGTCAGTGGAGGCAGACCGTCTGCATACCATGTTCCTTGCCATGGCTGATGCGAGAGCTGTCCTTATTAAATTGGCTGATAGATTGCATAACATGATGACACTAGATGCCTTGCCATTGGCCAAGCAACAAAGGTTTGCAAAGGAGACGTTGGAGATTTTTGCACCTTTGGCCAATCGGTTGGGAATATCTAGTTGGAAGGAACAATTAGAAAACTTGTGTTTTAAGCATATCAACCCAGACCAGCATAAGGAGATTTCTTCAAAGCTTGTGGACTCATTTGATGATGCTATGTTTAGTTCTGCTATAGAGAGATTAGAGCAAGCACTAAAAGATGAAGGCATTTCATATCATGTACTTTCTGGGCGACACAAGAGCTTGTATAGCATCTATTGTAAAATGCTGAAGAAGAAGCTAACCATGGATGACATTCATGATATTTATGGGTTGCGCTTGATTGTTGACAAGGAGGAAGACTGTTATAAAGCCCTAACAGTCGTTCACCGGTTATGGTCTGAGGTGCCTGGAAAGCTGAAAGACTACATAAGTCATCCCAAGTTCAATGGGTATAAATCTCTTCATACTGTAGTGATGAGTGAAGGCAAGATTCCCCTTGAAGTACAAATCCGGACAAAAGAGATGCATCTGCAAGCAGAATTTGGATTTGCTGCTCATTGGAGATACAAGGAAGGCGATTGCCAGCATTCATCATTTGTGCTTCAGATGGTTGAATGGGCTCGATGGGTAGTCACCTGGCATTGTGAGACAATGAGTAAAGATTGTTGTTCATCCATTGGATATGTCGATTCAGTTAAGCCACCATGCAAGTTCCCTTCCCATGCCAAAGATTGTCCATATTCTTACAAAACTCATTGCGGTCACGACGGCCCTGTCTTTGTAATCATGATCGAGAATGATAAGATGTCTGTCCAGGAGTTTTCGGCAAACTCGACGGTAATGGACTTGCTGGAACGCGCCGGGAGAGGAAGCTCTCGATGGACCCCATATAGATTTCCACTGAAAGAGGAGCTAAGGCCAAGGCTAAACTATGAGCCTGTGAGTGATCCAAAGTGCAAGTTGAACATGGGAGATGTGGTGGAGCTTACACCAGCCATACCTGACAAGTCTCTGACGGAATATAGGGAAGAAATCCAACGTATGTACAATAGAGGCCTAACTGTACCTGCTGCTGAAACTGGCATGGTTGGCTCAAGAAGCTGA 2181 0.4709 MTVSTIALYASPPSSVCSTPHPCHINAHGSYDFELGSRSSSSSSSATASTSQKPVVMSGLSCLFSSPTVKHAPPLSSFSGAGEELGSLWHDKGEELSSSFSYSSSKLCASSWKRDQSPVSVFQGPVSCTSSSVSGSVRSSPMRIGSDSSIGFVRNALGSSCLDYDSRSFDVRRGDLDVGSSSPSSLVDELTFNLEDTFVEGSFEPYARELLVGAQLRHKIFCEEFVIKAFYEAEKAHRGQMRASGDPYLQHCVETAVLLALIGANSTVVAAGLLHDSLDDSFLTYDYIFGAFGAGVADLVEGVSKLSHLSKLARESNTASKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLAKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHINPDQHKEISSKLVDSFDDAMFSSAIERLEQALKDEGISYHVLSGRHKSLYSIYCKMLKKKLTMDDIHDIYGLRLIVDKEEDCYKALTVVHRLWSEVPGKLKDYISHPKFNGYKSLHTVVMSEGKIPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVVTWHCETMSKDCCSSIGYVDSVKPPCKFPSHAKDCPYSYKTHCGHDGPVFVIMIENDKMSVQEFSANSTVMDLLERAGRGSSRWTPYRFPLKEELRPRLNYEPVSDPKCKLNMGDVVELTPAIPDKSLTEYREEIQRMYNRGLTVPAAETGMVGSRS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0505 726 SMART hd_13 244 361 IPR003607 -
Sto1g0505 726 Gene3D Hypothetical protein af1432 215 399 - -
Sto1g0505 726 Gene3D Beta Polymerase, domain 2 402 532 IPR043519 -
Sto1g0505 726 Pfam HD domain 231 383 - -
Sto1g0505 726 ProSiteProfiles HD domain profile. 248 352 IPR006674 -
Sto1g0505 726 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 722 - -
Sto1g0505 726 Pfam Region found in RelA / SpoT proteins 442 551 IPR007685 GO:0015969
Sto1g0505 726 ProSiteProfiles S4 RNA-binding domain profile. 667 703 - -
Sto1g0505 726 SUPERFAMILY HD-domain/PDEase-like 209 398 - -
Sto1g0505 726 SMART RelA_SpoT_2 442 552 IPR007685 GO:0015969
Sto1g0505 726 CDD HDc 246 374 IPR003607 -
Sto1g0505 726 PANTHER - 1 722 - -
Sto1g0505 726 CDD NT_Rel-Spo_like 422 540 IPR007685 GO:0015969
Sto1g0505 726 SUPERFAMILY Nucleotidyltransferase 389 578 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0505 Sto-Chr1 4642456 4646523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0505 241 551 EF-hand Containing Proteins AT3G17470 29.032 6.58e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0505 K00951 - gmx:100787301 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0505 1 4642456 4646523 Sto1g0505 1 4642456 4646523 ECH