Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0462 ATGGAACTCTACAAAATGAGCACTATTTCTCATCATCACCAACAAATTGGTGATAAAATGAGAGATCTTTACGAGGCATCATCTAGAGGATGTGTATCAACTTTGAACTCCCTTATGCATCAACACCCACATATTTTGTACAGAATTTCACAAACTTCCTTCACAGAAACTCCCTTACACATATCCTCTTCTCTTGGCCATTTTGACTTCACAAAAATCCTTCTCACCCACAATCCCAAACTTGCTCTCGAGTTGGACTTTTCTAGAAGAACACCCCTCCACATGGCCTCAGCTGAGGGCCACATCGAAATTGTTAAGGAATTAGTACAAGTTTATAAGGAGGCATGCTTGTTTTGTGATGAAGAAGGTAGAATTCCTTTGCACTATGCAGCCatgagaggaagaagagaagtTGCTAAAGAGTTGATCAGAGCCAAGCCTGAGTCTTTGAAGATTCTAGACAAAGGGAAAAATGTTCTTCATTTGTGTGTTATGTACAACCATTTGGAGACCTTGAAAGCTTTGGTTGAACTAGAAATTGACACCACTGAACTTCTGATCCACACAGATCATATGGATGGCAATAACAATATTCTCCATTTGGCTGTCATTTTGAAGTTAGTTCAGATTGTAGGCTATCTCCTGTCAATTCCTAAAATAACAGAAGCAGCAAACATGAAGAATGGTATGGGTTTCACTGCCTATGATATCTTACATCACAGCCCAAAGGACTTGAAAACGTTTGAAATACAACTTCTATTTATGGACAATGGAATCCAAAcagaagagagagaaatgaaCTATAGTACTCCACCACAGCCAACACCTCCATTACCAACAACTACCACTAACAATAATAATGGATATTATTATTGGAGAAGGATTTTGAGAAGTATAGACAATTCGTTAAACAATAAAGGTGATTGGGTAGAAGAGACAAGAGGGACCTTAAGTCTTGTAGCTACTGTGATTTCAACCATAACTTTTCAAGCTGGAATTAACACACCTGGTGGCTTCATTCAACAAGGCCATGCACTACTAGCCATTAGATCACCTTGGTTTCACTACTATGTATTCTGCAATACCATATGTTTCTGTGCTTCACTGAGTGTGACACTTTTGCTTGTGAGTGGAGTTCCTGTGAAGAATAGAGCTGTGATGTGGGTGTTATCTATAGGCATGTGTGTCACTCTCACGTTCCTAGGATTCACTTATAGTTTTGGAATCTCTATGATATTCCCTGGTCTTTGGGAGTCCACGTGCTCATCAATGGTTTCTAGGGTTTCCAATTATGCTTGGTATGTATTGCTAGGGCTTATTGGTCTTTTCTTTATGATGCGTTTAGGTATTTGGATTGTGAAGATGTGCATGAACAAAATCAATCTTCGTAGTGTAAGGTCGAATCAGCAGTGCATATAA 1419 0.3805 MELYKMSTISHHHQQIGDKMRDLYEASSRGCVSTLNSLMHQHPHILYRISQTSFTETPLHISSSLGHFDFTKILLTHNPKLALELDFSRRTPLHMASAEGHIEIVKELVQVYKEACLFCDEEGRIPLHYAAMRGRREVAKELIRAKPESLKILDKGKNVLHLCVMYNHLETLKALVELEIDTTELLIHTDHMDGNNNILHLAVILKLVQIVGYLLSIPKITEAANMKNGMGFTAYDILHHSPKDLKTFEIQLLFMDNGIQTEEREMNYSTPPQPTPPLPTTTTNNNNGYYYWRRILRSIDNSLNNKGDWVEETRGTLSLVATVISTITFQAGINTPGGFIQQGHALLAIRSPWFHYYVFCNTICFCASLSVTLLLVSGVPVKNRAVMWVLSIGMCVTLTFLGFTYSFGISMIFPGLWESTCSSMVSRVSNYAWYVLLGLIGLFFMMRLGIWIVKMCMNKINLRSVRSNQQCI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0462 472 SUPERFAMILY Ankyrin repeat 20 237 IPR036770 -
Sto1g0462 472 Pfam Ankyrin repeats (3 copies) 122 181 IPR002110 GO:0005515
Sto1g0462 472 Pfam Ankyrin repeats (3 copies) 24 110 IPR002110 GO:0005515
Sto1g0462 472 PANTHER HOMEOBOX PROTEIN WARIAI 23 377 - -
Sto1g0462 472 SMART ANK_2a 122 152 IPR002110 GO:0005515
Sto1g0462 472 SMART ANK_2a 194 223 IPR002110 GO:0005515
Sto1g0462 472 SMART ANK_2a 54 83 IPR002110 GO:0005515
Sto1g0462 472 SMART ANK_2a 155 184 IPR002110 GO:0005515
Sto1g0462 472 SMART ANK_2a 88 117 IPR002110 GO:0005515
Sto1g0462 472 ProSiteProfiles Ankyrin repeat profile. 88 110 IPR002110 GO:0005515
Sto1g0462 472 Gene3D - 6 251 IPR036770 -
Sto1g0462 472 ProSiteProfiles Ankyrin repeat region circular profile. 122 144 - -
Sto1g0462 472 ProSiteProfiles Ankyrin repeat profile. 122 144 IPR002110 GO:0005515
Sto1g0462 472 Pfam Domain of unknown function 308 411 IPR026961 -
Sto1g0462 472 ProSiteProfiles Ankyrin repeat region circular profile. 88 110 - -
Sto1g0462 472 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 23 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0462 Sto-Chr1 4106194 4108944 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0462 23 448 Miscellaneous Gene Families AT1G14500 25.172 1.26e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0462 - - qlo:115989894 348.977