Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0460 ATGAACCCTTCTTATCATCCTAACGATGATCACTACAATATGAAGCTTCTCTACGAGGCATCATACGAAGGTTGCGTTGAAAGGTTGATCTCACTTATCACACACAAAGACAGACTAATCCTTCACAAAATCTCCCAAACTTCCTTCCCTCAAACTCCCTTACACATCTCATCTTTGCTTGGCCATCTTGATTTCACAAAGGCACTTCTCTCTCACAATCCCCATCTTGCCCTTGAGTTGGACTCTTCTAGAAGCACACCCCTCCACTTGGCCTCAGCAGAAGGTCACATCCAAATTGTGAAGGAATTGCTGAAAGGGAAAGCCAATAAGGAAGCATGCTTGTTTCCTAATGAAGAAGGCAGAATTCCTTTGCACTATGCAGCCATGAGAGGAAGAGTAGAGATTGCAAAAGAGTTAATTAGAGCAAAGGCTGAATCTTTGAGTTTGCATGACAATAATGGAAATAATGTTTTGCATTTTTGTGTTATGTACAACCATTTGGAAACACTCAAAGCCTTAGTGGTGGAATTGGAGCCTCAGAAAAGTGGAGAGATTCTCAACCATACAACTTTTGATGGGAAGAATACCATCCTCCATTTAGCTGTTATGTTCAAACAAGTTGAGACCGTAAGATACCTCCTTTCTATATCCGAAATAAGAGAAGCAGGCAGCATCATGAAGAACGCCATGGGCTTCACAGCGCATGACATGGTGAAGCAAAGTCCAGAAGACTTGAAAAGCCTTAAAATACAAGCCATTTTGACAAAGGCAGGAGGCATCATAACAACACCCCAAGAGATGATAGGTCTTGAGTCCCCTCaagcacacccaccaccaccacatcAATGTACTAGTACTAGTACCGACCTCATTGATGAAATTAGGCCTAGGAATAAGGATAATAATTGTTGCGAAAGGATCTTCAACTTCACAGGAAACTGGTTCAACCATCCAGACAAGGACACGTGGTtcaaagagatgaagaagaacctAAGCCTCGTGGCTACTTTGATATCAACCTTAAGCTTCCAAGCCTTAATCAACCCACCCGGTGGCTTCATCCAACAAGGCTCGGCTTCTTCAAACCCCACACCACAAACTTTATCACCTTTGGGACAACCAAACAACTACTTTAGCCCACAGCCACCACTAGGTGACTCCCTCGAATGTTTCAGACTCAATGGTCATAAGTTTTGTCCCGGAGAAGCACTCTTGTCTTTCCATTACAGAGTGTTGTTTTTCTTGTACTTGTGTTGCAACACCACCTCTTTCGTTTCGTCACTCAGTGTGGCACTCTTGCTCGTGAGTGGGTTTTCCCTCAAGAATAGAGTTGTGATGTGGGTGATATCATTGGGCATGTGTGTGGCTCTCATGTCCCTAGCACTGGCCTACTTTTTCGCAGCCTTGATGATAGTCCCATTTGAACTTTGGGATCAGACGTATTGTGTGCTTTTCGGTTCACTTGCGGCGTGGATAGTGTTGGTTGCGATCGTTGCATCGTTGTTCACGATTCGATTTTCGGTTTGGGTTGTCAAGTCTTGCGTGAGGGGAGTCGAGTGGATGaggaaagaaaatttCGTCTTGGATCTTAAAGTGAAGGCTAAAGGATACAAATGA 1617 0.423 MNPSYHPNDDHYNMKLLYEASYEGCVERLISLITHKDRLILHKISQTSFPQTPLHISSLLGHLDFTKALLSHNPHLALELDSSRSTPLHLASAEGHIQIVKELLKGKANKEACLFPNEEGRIPLHYAAMRGRVEIAKELIRAKAESLSLHDNNGNNVLHFCVMYNHLETLKALVVELEPQKSGEILNHTTFDGKNTILHLAVMFKQVETVRYLLSISEIREAGSIMKNAMGFTAHDMVKQSPEDLKSLKIQAILTKAGGIITTPQEMIGLESPQAHPPPPHQCTSTSTDLIDEIRPRNKDNNCCERIFNFTGNWFNHPDKDTWFKEMKKNLSLVATLISTLSFQALINPPGGFIQQGSASSNPTPQTLSPLGQPNNYFSPQPPLGDSLECFRLNGHKFCPGEALLSFHYRVLFFLYLCCNTTSFVSSLSVALLLVSGFSLKNRVVMWVISLGMCVALMSLALAYFFAALMIVPFELWDQTYCVLFGSLAAWIVLVAIVASLFTIRFSVWVVKSCVRGVEWMRKENFVLDLKVKAKGYK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0460 538 ProSiteProfiles Ankyrin repeat profile. 83 109 IPR002110 GO:0005515
Sto1g0460 538 SUPERFAMILY Ankyrin repeat 10 237 IPR036770 -
Sto1g0460 538 ProSiteProfiles Ankyrin repeat region circular profile. 83 109 - -
Sto1g0460 538 Pfam Ankyrin repeats (3 copies) 17 110 IPR002110 GO:0005515
Sto1g0460 538 Pfam Ankyrin repeats (3 copies) 117 174 IPR002110 GO:0005515
Sto1g0460 538 PANTHER HOMEOBOX PROTEIN WARIAI 18 494 - -
Sto1g0460 538 ProSiteProfiles Ankyrin repeat profile. 119 151 IPR002110 GO:0005515
Sto1g0460 538 Pfam Domain of unknown function 400 469 IPR026961 -
Sto1g0460 538 Pfam Domain of unknown function 322 359 IPR026961 -
Sto1g0460 538 Gene3D - 7 249 IPR036770 -
Sto1g0460 538 ProSiteProfiles Ankyrin repeat region circular profile. 119 145 - -
Sto1g0460 538 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 18 494 - -
Sto1g0460 538 SMART ANK_2a 119 149 IPR002110 GO:0005515
Sto1g0460 538 SMART ANK_2a 193 221 IPR002110 GO:0005515
Sto1g0460 538 SMART ANK_2a 49 78 IPR002110 GO:0005515
Sto1g0460 538 SMART ANK_2a 153 182 IPR002110 GO:0005515
Sto1g0460 538 SMART ANK_2a 83 112 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0460 Sto-Chr1 4093783 4097132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0460 20 359 Miscellaneous Gene Families AT4G10720 27.666 2.64e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0460 - - qsu:111986570 306.219