Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0392 ATGTATCGAATAGCTTCCAAACTAGCTTCTTCCTCATCGAAAAAACTGGTACTTAGTCGGATTACATCAAGCAGAAATTATGTGGCGAAGGATATCAACTTTGGAGTTGGGGCTCGTGCTGCTATGCTGCAGGGGGTTTCTGAGGTGGCTGCAGCTGTAAAAGTAACAATGGGACCCAAGGGTCGCAATGTAATTATTGAGAAAAGTCATGGAAGCCCCAAGGTTACAAAGGATGGAGTGACTGTAGCCAAAAGTATCAAATTTAAAGACAAAGCAAAAAATCTTGGTGCTGATCTTGTGAAGCAGGTGGCTAAGGCTACCAATACTGCTGCTGGGGATGGTGATGACTTCTCTCTGAAACTTTGTTACTCCAAAATGTTCTACGAATGTACAACTTGTGCAACTGTTCTGACTCAGGCAATACTCACAGAAGGCTGCAAATCAGTTGCTGCTGGTGTTAATGTCATGGATTTGCGTAATGGTATAAATAAGGCAGTTGATGCTGTAATTACTGATTTGAAAAGCAGAGCATTAATGATTAGCACACCAGAAGAAATAACTCAGGTTGGAACTATATCTGCAAATGGAGAGCGAGATATTGGAGAACTTATAGCTAAAGCAATGGAGAAAGTAGGGAAGGAAGGAGTCATTACTGTTGCAGATGGGAATACTTTGGAAAATGAGTTGGAAGTGGTAGAAGGAATGAAGCTAGCCAGAGGCTATATATCTCCTTATTTTATTACTGATCATAAGACCCAGAAATGTGAATTGGAGCACCCCCTTATCCTCATCCATGAGAAGAAAATATCAGACATGAACTCGCTGGTGAAAATTTTGGAGCTGGCAGTGAAGAAAAATAGACCACTTCTTGTTGTTGCGGAGGATGTTGAGAGTGATGCTCTGGCTATGCTCATACTCAACAAGCATCATGCTGGGCTTAAGGTTTGTGCTATAAAAGCTCCTGGTTTTGGCGAAAATAGAAAAGCAAGTCTAGATGATCTTGCCATTCTTACTGGAGGAGAGGTCATCACAGAAGAGCGTGGTTTGACCCTTGACAAAGTCCAACAAGAAATGCTCGGTACTGCAAAAAAGGTTACTGTCTCTCTTGATGACACTGTCATTCTACATGGTGGTGGGGATAAGAAGCTTATTGAAGAAAGATGTGAAGAGCTCAGGGCAGCAATGGATAAGAGTACAGCCGTGTTTGATAAGGAGAAAGCACAGGAACGGCTATCAAAGCTATCTGGTGGTGTAGCTGTTTTCAAGGTTGGAGGAGCTAGTGAGATAGAAGTTGGGGAAAGGAAGGATAGGGTTACAGATGCTTTAAATGCTACTCGAGCAGCCGTTGAGGAAGGAATTGTTCCTGGTGGTGGAGTTGCTCTCTTACATGCTAGCAAAATATTGGAGAACCTCCAAACCCAAAATGAGGATGAGAAAAGAGGAGTACAGATCATTCAGAATGCACTTAAGGCACCTACTTCCACAATAGTTTCTAATGCTGGTTTTGATGGTGCTTTGGTTGTTGGCAAATTGTTGGAACAAGACAATCATAGGTTTGGTTTTGATGCTGCTAAAGGTGCCTATGTCGATATGGTGACGTCTGGAATTATAGATCCTCTCAAAGTTGTCAGAACAGCCTTGGTAGATGCTTCCAGTGTGTCATTGCTACTGACAACAACTGAAGCAGCTGTGGTGGATGATCCAGATGACAAAAATAAACCTCCCAGCCGGGTCCCAGATATGGATGATTTGGGATACTAA 1761 0.4259 MYRIASKLASSSSKKLVLSRITSSRNYVAKDINFGVGARAAMLQGVSEVAAAVKVTMGPKGRNVIIEKSHGSPKVTKDGVTVAKSIKFKDKAKNLGADLVKQVAKATNTAAGDGDDFSLKLCYSKMFYECTTCATVLTQAILTEGCKSVAAGVNVMDLRNGINKAVDAVITDLKSRALMISTPEEITQVGTISANGERDIGELIAKAMEKVGKEGVITVADGNTLENELEVVEGMKLARGYISPYFITDHKTQKCELEHPLILIHEKKISDMNSLVKILELAVKKNRPLLVVAEDVESDALAMLILNKHHAGLKVCAIKAPGFGENRKASLDDLAILTGGEVITEERGLTLDKVQQEMLGTAKKVTVSLDDTVILHGGGDKKLIEERCEELRAAMDKSTAVFDKEKAQERLSKLSGGVAVFKVGGASEIEVGERKDRVTDALNATRAAVEEGIVPGGGVALLHASKILENLQTQNEDEKRGVQIIQNALKAPTSTIVSNAGFDGALVVGKLLEQDNHRFGFDAAKGAYVDMVTSGIIDPLKVVRTALVDASSVSLLLTTTEAAVVDDPDDKNKPPSRVPDMDDLGY 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0392 586 TIGRFAM GroEL: chaperonin GroL 29 569 IPR001844 GO:0042026|GO:0140662
Sto1g0392 586 SUPERFAMILY GroEL equatorial domain-like 33 564 IPR027413 -
Sto1g0392 586 Coils Coil 468 488 - -
Sto1g0392 586 Gene3D GroEL 234 415 IPR027409 -
Sto1g0392 586 Gene3D - 179 452 IPR027410 -
Sto1g0392 586 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 17 578 - -
Sto1g0392 586 ProSitePatterns Chaperonins cpn60 signature. 447 458 IPR018370 GO:0005524|GO:0006457
Sto1g0392 586 Pfam TCP-1/cpn60 chaperonin family 49 566 IPR002423 GO:0005524
Sto1g0392 586 CDD GroEL 30 566 IPR001844 GO:0042026|GO:0140662
Sto1g0392 586 PRINTS 60kDa chaperonin signature 53 79 IPR001844 GO:0042026|GO:0140662
Sto1g0392 586 PRINTS 60kDa chaperonin signature 310 333 IPR001844 GO:0042026|GO:0140662
Sto1g0392 586 PRINTS 60kDa chaperonin signature 392 417 IPR001844 GO:0042026|GO:0140662
Sto1g0392 586 PRINTS 60kDa chaperonin signature 440 461 IPR001844 GO:0042026|GO:0140662
Sto1g0392 586 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 17 578 - -
Sto1g0392 586 Gene3D - 32 565 IPR027413 -
Sto1g0392 586 MobiDBLite consensus disorder prediction 565 586 - -
Sto1g0392 586 SUPERFAMILY GroEL-intermediate domain like 180 238 IPR027410 -
Sto1g0392 586 Hamap Chaperonin GroEL [groEL]. 28 586 IPR001844 GO:0042026|GO:0140662
Sto1g0392 586 SUPERFAMILY GroEL apical domain-like 226 418 IPR027409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0392 Sto-Chr1 3226314 3232133 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0392 K04077 - gmx:100778935 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0392 1 3226314 3232133 Sto1g0392 1 3226314 3232133 ECH