Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0245 ATGGATGCCGATGAAGATAGTAAATGCGACCCAAAGTTCCCAGCCTTTCCCTTTAAAACCCTACTCGATCCAGATCGATTTCATGAACGCTCTCTATCATTCTCTCGACCAAGGTGGCGTTTCCATGCTAGAAAGTCCCTACCGGAGAATAATGGTGGGATTGGTTCGGATGATGAACCTGATTGGATGAGAGACTTTGTTGTGAACAAAGAAAAACAAGGCCAacctgaaagaaaaattaagaaaaagtatGGATCTCTATTAGGTAAACCTAATAGGAAGGAGAGGGACATTTGCAAGGATTTTCAGGTTGCGGGTGAAGATTCGACTCCTGAGAAGGGGTGTGAGAATTTGTATAAGAAAATTGATGAAGTTGACTTGGATGTTAATGATAAGGAATTTTTACTTGATGAGTATGAAAGTGAAGATGAAGAAGCTCTGGGTAATGGAACATCAAAGAGGAAGGCTACTAAAAGTGTCTTTACTTCGTCCAGTGAAGAGGACGAGTCTTATGAGGAAGAGGAGGGGCAAGAGGAAAAAAAGTTCAAGGTTTATTTTTGTAGTCGAACGCATTCACAGCTTTCACAGTTCATAAGGGAATTAAGGAAGACAGTCTTTGCTAATGAAATAGATGCTGTTTGCTTAGGCTCCAGGAAAAATCTTTGCATTAACGAAGAAGTACTAAAACTTGGAAACCCCACACGCATGAATGAGCGGTGCTTGGAACTCCagacaaaaaagaagaatgaacccACAAAAGTTAAGGTACCAAGGTTTAACAAGGACTTTTGCAATTATAGAGGGCCCCTGGATATTGAAGATCTTGCTAACCTGGGAAGAAATTTGGGAACCTGTCCTTATTATGGCTCTAGAAGCATGATTTTGGGAGCTGATCTTGTGGTGCTACCATATCAATCTCTTCTCTCCAAATCATCTCGTGAAGCACTTGGTCTAAATTTGAAatccaatattattattatagatgAGGCTCATAATTTAGCTGATTCACTCATCAGCATGTATGACTCCAAAATCACTTTATCACAGCTGGAAAATGTGCATTCCCATGTGGATACATACTTCGGAAAATTTTGTAATCTTTTGGGACCTGGTAATCGAAGATATATTCAGACTCTGTTGGTCCTCACTCGAGCATTCCTCCGTTTGCTACTGAATGAGAAGGATACAAATCCCATAGATTCTTTCCAAGATATAGAAAAGGCTTCTGAAGAAAGAAGGGTCTCTGAATTTACCATGTCCATAAATGATTTTATGTTTGAGCTAAATGTAGACAATATCAACTTGGTAAAATTGGTGAAATATATGAAGGAAAGCAAAATCATGCACAAGGTGAGTAGTTATGGAGAAAAAGTTACTAGCTTAGAAAATATTTCAGTAATCAATAAATTTGGGGAACATTATGAGGAGGGAAGCACTCAGTCTGCGTTTCAGGCATTAGCTGACATATTACTATCACTGATAAACAATGATAGTGATGGAAGGATAATCATTTCCAGGTCTAGATCAGCGATCTCCGGGAAACAAAAAGgatatattaaatatgttatGCTCAGTGGAGAGAAGCTTTTCTCTGAGATTGTAGACCAAGCACATGCTGTTCTATTAGTAGGTGGAACTCTGCAACCTACTgaagaaacaagagagagacTCTTTCCATGGTTACCACCAAACCAGTTACATTTCTTTTCATGCGGTCATATTGTTCCTCCACAGAGTATTATGCCAATTGCAGTTTCCCGTGGCCCTTCTGGTCGCACTTTTGATTTTAGCTACAGCTCCAGGACTTCACCAGATACGATGCGGGAGCTAGGTCTTCTCCTCTGTAATTTAGTGACTGTGGTTCCCGAAGGAATTgttgttttcttctcttcttttgatTATGAAGGAAAAGTCTATGAAGCCTGGGAATCTTCTGGCATCCTGGAGAGAATTACAAAGAGGAAGCGTATATTTAGAGAGCCTAGGAATAATACAGATGTTGAATCTGTTCTTAAGGAATATAAAGAAACAGTTTGTACATTGTCAAGTATAAATTCAGAAGGAAACCCAGCATCTCCTGGCGGTGCAATACTCCTAGCTGTTGTTGGTGGCAAGATATCTGAAGGGATTAACTTAAGTGATGGGATGGGTCGATGCGTAGTCATGGTTGGACTGCCATACCCTAGTCCATCGGACATTGAGTTGTTAGAGAGGATAAAGCACATTGAAGGctttcaaaattcaaactctGTTGAGACTCGTAGATTTTCTGCCAGTAATAATGTTTACAGTGGCGATATACAAGGTGGTTTTGACATCTTAAGAAGTTGCAGTCATAGAGGAAAAGAATACTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCAATCCGTCACATTAATGACTATGCAGCAATTTTGTTGGTTGACACAAGGTATGCATCTGATTCCTCAAAAAGGAGCTTTTCCCACCCAGTCAACAAGCTCCCCCAGTGGATAAAAGATCGGTCATCTAGTGGTTCGTCGTCATCTTTCAAGAGTTGCAAGCCAGGATTCATTGGTGTGCTGCAGGGCTTGGCTCCCAACTTTCCTGTTTTCGCTAATTGTGAATTGCTCTGA 2631 0.385 MDADEDSKCDPKFPAFPFKTLLDPDRFHERSLSFSRPRWRFHARKSLPENNGGIGSDDEPDWMRDFVVNKEKQGQPERKIKKKYGSLLGKPNRKERDICKDFQVAGEDSTPEKGCENLYKKIDEVDLDVNDKEFLLDEYESEDEEALGNGTSKRKATKSVFTSSSEEDESYEEEEGQEEKKFKVYFCSRTHSQLSQFIRELRKTVFANEIDAVCLGSRKNLCINEEVLKLGNPTRMNERCLELQTKKKNEPTKVKVPRFNKDFCNYRGPLDIEDLANLGRNLGTCPYYGSRSMILGADLVVLPYQSLLSKSSREALGLNLKSNIIIIDEAHNLADSLISMYDSKITLSQLENVHSHVDTYFGKFCNLLGPGNRRYIQTLLVLTRAFLRLLLNEKDTNPIDSFQDIEKASEERRVSEFTMSINDFMFELNVDNINLVKLVKYMKESKIMHKVSSYGEKVTSLENISVINKFGEHYEEGSTQSAFQALADILLSLINNDSDGRIIISRSRSAISGKQKGYIKYVMLSGEKLFSEIVDQAHAVLLVGGTLQPTEETRERLFPWLPPNQLHFFSCGHIVPPQSIMPIAVSRGPSGRTFDFSYSSRTSPDTMRELGLLLCNLVTVVPEGIVVFFSSFDYEGKVYEAWESSGILERITKRKRIFREPRNNTDVESVLKEYKETVCTLSSINSEGNPASPGGAILLAVVGGKISEGINLSDGMGRCVVMVGLPYPSPSDIELLERIKHIEGFQNSNSVETRRFSASNNVYSGDIQGGFDILRSCSHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSFSHPVNKLPQWIKDRSSSGSSSSFKSCKPGFIGVLQGLAPNFPVFANCELL 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0245 876 Gene3D - 592 832 IPR027417 -
Sto1g0245 876 SMART Cxpdneu3 632 819 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Sto1g0245 876 Gene3D - 152 369 IPR027417 -
Sto1g0245 876 SMART deadxpd 12 372 IPR006554 GO:0003678|GO:0016818
Sto1g0245 876 Pfam DEAD_2 186 350 IPR010614 GO:0003677|GO:0003678|GO:0005524
Sto1g0245 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 117 392 IPR014013 GO:0005524
Sto1g0245 876 MobiDBLite consensus disorder prediction 140 175 - -
Sto1g0245 876 CDD SF2_C_XPD 579 817 - -
Sto1g0245 876 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 97 843 IPR045028 -
Sto1g0245 876 TIGRFAM rad3: DNA repair helicase (rad3) 119 844 IPR013020 GO:0003678
Sto1g0245 876 Pfam Helicase C-terminal domain 614 830 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Sto1g0245 876 PANTHER ATP-DEPENDENT DNA HELICASE DDX11-RELATED 97 843 IPR028331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0245 Sto-Chr1 1842538 1850506 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0245 K11273 - gmx:106794132 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0245 1 1842538 1850506 Sto1g0245 1 1842538 1850506 ECH