Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0197 ATGGCGTCCGGTTCGCCTTCTCTAATGTGGTTCCGAAAGGGCCTTAGGATCCACGACAATCCGGCTCTGGAATTTGCTTGCAAAGGCTCGAATCGTCTTTACCCGGTTTTCGTTATCGACCCGCATTACATGGAGCCGGACCCGAATGCATTTTCCACCGGTTCTTCTCGTGCCGGTCTGAACCGTATCAAATTCTTGCTCGAAAGCCTCGTGGACCTTGATTTGAACCTTAAGAAGCTTGGATCGCGATTGCTGGTGCTTAAGGGTGAACCAGGACGCGTTTTGATTCATTGCTTGAAAGAGTGGAACATCAGAAAGCTGTGCTTTGAGTATGATACTGAACCATATTATCAGGCTTTAGATACTACGGTTAAGGACTATGCAGTTTCAGCTGGAGTTGAGGTTTTCTCTCCTGTAAGTCACACGCTCTTCAATCCTGCGGATATTATACAGAAGAATGGAGGGAAGCCACCTCTTAGTTATCAATCGTTTGTGAAGCTTGCTGGAGAACCGTTACCCCCTCTCTCAAATAAGGTCTCTTCACTTCCTCCAGTTGGTCATCTTGGAAGTTGTGAGATATCTGAAGTTCCAACAGTCAAAGAGCTTGGATATGAAAACGTTGAACAGGGTCAATTCTCTCCTTTCAAAGGTGGTGAATCAGAAGCTTTGAAGAGGCTGACTGAATGCATGGAAAAAAAGgAGTGGGTGGCAAACTTCGAGAAACCCAAGGGTAATCCATCTGCATTTCTTACACCAGAAACAACTGTTCTATCACCTTACTtgaaaTTTGGCTGTCTATCCTCCAGATATTTCTACAATCAGATTCAAGAAGTATATAAAACTATGCCAAAGCATACATCACCACCTGTTTCTCTTGTAGGACAGTTGTTGTGGCGAGACTTCTTCTATACAGTGGCTTTTGGGACTCCAAATTTTGATAGGATGAAAGGCAATAGAATATGCAAGCAGATACCTTGGCAGGATGACGAAAAACTTCTAGAGGCTTGGAGGGAGGGTAGGACAGGATTTCCATGGATTGATGCCATCATGACTCAGCTCCACAAATGGGGTTGGATGCACCATCTGGCACGGCATTCTGTTGCATGTTTTCTTACTCGCGGTGATTTGTTTATTCACTGGGAGAAAGGGCGTGATGTCTTTGAGAGGCTTCTTATTGATTCAGACTGGGCAATTAATAATGGAAACTGGCTTTGGCTCTCATGTTCATCCTTTTTTTATCAGTATAATCGTATTTATTCTCCAATCTCGTTTGGTAAGAAGTATGACCCCAAAGGTGACTTCATAAGGCATTTTCTCCCTGTACTAAAAGATATGCCTAAGGAGTATATTTATGAACCGTGGACTGCTCCTCTAAGCGTTCAGACCAAAGCAAATTGCATTATTGGCAAAGACTACCCAATGCCAGTTGTTTCTCATGATTCTGCGATCAAGGAGTGCAGAAGGAAAATGGGTGAGGCATATGCATTAAACAAGGAATTGAATGGCTTGGTAAGCGAAGAAGATCTGAAAAACTTGAGGAGGAAGTTAGATAAGGATCAAGAGCAAGAAGAGGCAGCTAAACCTAAAAAAAGATTTAGACAGCAACTGATTGGGTAA 1617 0.4317 MASGSPSLMWFRKGLRIHDNPALEFACKGSNRLYPVFVIDPHYMEPDPNAFSTGSSRAGLNRIKFLLESLVDLDLNLKKLGSRLLVLKGEPGRVLIHCLKEWNIRKLCFEYDTEPYYQALDTTVKDYAVSAGVEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFVKLAGEPLPPLSNKVSSLPPVGHLGSCEISEVPTVKELGYENVEQGQFSPFKGGESEALKRLTECMEKKEWVANFEKPKGNPSAFLTPETTVLSPYLKFGCLSSRYFYNQIQEVYKTMPKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDRMKGNRICKQIPWQDDEKLLEAWREGRTGFPWIDAIMTQLHKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYDPKGDFIRHFLPVLKDMPKEYIYEPWTAPLSVQTKANCIIGKDYPMPVVSHDSAIKECRRKMGEAYALNKELNGLVSEEDLKNLRRKLDKDQEQEEAAKPKKRFRQQLIG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0197 538 MobiDBLite consensus disorder prediction 516 538 - -
Sto1g0197 538 Gene3D - 141 308 - -
Sto1g0197 538 MobiDBLite consensus disorder prediction 516 531 - -
Sto1g0197 538 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 206 496 IPR036134 -
Sto1g0197 538 Pfam DNA photolyase 7 168 IPR006050 -
Sto1g0197 538 Gene3D HUPs 2 140 IPR014729 -
Sto1g0197 538 Pfam FAD binding domain of DNA photolyase 294 490 IPR005101 -
Sto1g0197 538 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 310 536 - -
Sto1g0197 538 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 4 188 IPR036155 -
Sto1g0197 538 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 143 IPR006050 -
Sto1g0197 538 PANTHER CRYPTOCHROME 7 501 IPR002081 -
Sto1g0197 538 Coils Coil 506 526 - -
Sto1g0197 538 PANTHER (6-4)-PHOTOLYASE, ISOFORM A 7 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0197 Sto-Chr1 1378452 1383277 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0197 K02295 - gmx:100780347 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0197 1 1378452 1383277 Sto1g0197 1 1378452 1383277 ECH