Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0132 ATGTCGTCTCTCAGTAGAGAATTGGTGTTCTTGATTTTACAGTTTCTGGATGAGGAAAAGTTCAAAGAGACTGTTCACAAGCTTGAACAGGAGTCTGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCATAATGGCAATTGGGATGAGGTTGAAAAATATCTCTCTGGTTTCACAAAAGTTGATGATAATCGGTATTCAATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTACCTTGAGGCATTAGATAAGCATGACAGGTCCAAGGCTGTAGAAATTTTGGTGAAAGATTTGAAAGTTTTTTCCACATTTAATGAAGACCTATTCAAGGAAATCACACAGCTGTTGACATTGGAGAATTTCAGGGAAAATGAACAATTGTCAAAGTATGGTGATACGAAGTCTGCAAGGGCAatcatgttagttgaacttaaAAAGCTGATTGAAGCAAATCCATTATTCCGTGATAAATTGCAGTTTCCCAACCTTAAAAATTCAAGGTTACGGACTCTCATTAATCAGAGCTTGAATTGGCAGCATCAACTCTGTAAGAACCCACGGCCAAATCCAGATATAAAAACTCTTTTTGTGGATCACTCTTGTGGACAACCAAATGGTGCACGGGCTCCATCACCTGCTAATAATCCACTCCTTGGATCCTTACCAAAGGCTGGAGGGTTTCCCCCACTTGGTGCACATGGGCCTTTTCAACCAACACCAGCACCAGTGCCAGCTCCCCTGGCAGGATGGATGTCAAATCCTACCACTGTAGCTCATGCTGCAGTCTCTGGAGGAGGAGCTATAGGTCTTGGTGCTCCATCAATTCCTgATGTTTCATTACCTTTAGCTGCTTTGAAGCACCCACGGACCCCTCCCACTAATCCTTCTGTTGACTACCCATCTGGAGATTCTGATCATGTATCTAAGAGAATTAGACCAATGGGAATGTCAGATGAGGTGAATCTACCTGTTAATGTGTTGCCAGCAGCATTTCCAGGTCATGGGCATGGCCAATCTTTTAATGCACCTGATGACTTACCGAAGACTGTCACACGAACTCTGAATCAGGGTTCATCTCCTATGAGCATGGACTTCCATCCTGTTCAACAGTCCTTGCTTCTTGTTGGCACCAATGTGGGGGACATTGCTTTGTGGGAAGTGGGTTCACGGGAGCGACTGGTCTTGAGGAACTTCAAAGTTTGGGATCTTAGTGCTTGTTCAATGCCACTTCAGGCTGCTCTCGTCAAAGATCCTAGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCAAGGCATATTGTTCAGATATACTCTTTCCAAGGTGGTGATGATGTGAGGCAGCACCTGGAGATCGATGCTCATGTTGGTGGAGTGAATGATCTAGCATTTTCCCATCCAAATAAGCAACTATGTGTCATAACCTGTGGTGATGATAAGACCATTAAGgtttgggatgcTACTACGGGTGCAAAACAGTATACTTTCGAAGGTCATGAGGCTCCAGTTTATTCTGTTTGCCCTCATTATAAAGAAAACATTCAGTTCATATTTTCAACAGCGTTAGATGGAAAGATAAAGGCATGGTTGTATGACAATTTGGGGTCTCGTGTTGATTATGATGCCCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTCTCTTGTGGAACAAGCAAAGATGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTTAAAAGAACTTACCAAGGATTTCGAAAACGATCTTTGGGTGTTGTGCAATTTGATACAACAAAAAATCGTTTTCTGGCTGCTGGTGATGATTTCTCCATTAAATTCTGGGATATGGACAATGTTCAACTTTTGACAACTGTTGATGCTGATGGAGGTCTACCAGCAAGCCCACGCATCCGTTTCAACAAGGATGGAACTCTCTTGGCTGTTTCTGCAAGTGAGAACGGAATTAAAATATTAGCCAATGCAGATGGCATAAGATTGTTGCGTACATTAGAGAATTCTTTATACGAGGCATCAAGAACATCTGAAGCCATGGCAAAGCCTACAATAAATCCAATTTCGgctgcagcagcagcagcagctgcTGCAAGTAGTGCTGCACTTGCAGAGAGGGGCCCATCTGTTGTAGCTATTGCTGGAATGAATGGGGATGCCCGGAATATGGCTGATGTTAAACCTAGAATAACTGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAACGAACCAACTCAATGTAGATCCATGAAGCTACCTGAGAATTTGAGAGTAACCAAGATATCGAGGTTGATCTATACAAATTCAGGTAATGCTATACTGGCATTATCATCAAATGCCATTCATTTGCTCTGGAAATGGCAGCGAAGTGACCGCAATTCTTCTGGCAAGGCCACTGCCAGTGTGTTACCCCACTTGTGGCAACCATCAAGCGGCATCCTGATGACCAATGACATTTCTGACAGCAATCCTGAGGATGCTGTGCCCTGTTTTGCTCTTTCCAAAAATGATTCCTATGTAATGTCAGCATCAGGAGGGAAGATTTCCTTGTTCAATATGATGACTTTTAAGACAATGACAACTTTCATGCCTCCACCACCTGCAGCAACCTTTCTTGCTTTCCACCCCCAGGATAACAATATTATTGCTATTGGGATGGATGATTCCACCATTCAGATATATAATGTCCGTGTGGATGAGGTTAAAAGTAAACTCAAAGGTCACACTAAAAGAATAACCGGCCTTGCTTTTTCTCATGCATTGAATGTGCTAGTTTCATCTGGGGCAGATGCTCAGATTTGTGTGTGGAATACTGATGGATGGGAAAAGCAGAAGACAAGATTCTTGCAGCTTCCTGCTGGGAGGACTCCAACAGCACAGGCAGAAACCCGTGTACAGTTTCATCAGGACCAGATACACTTCTTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAACAGCAAAACTAGAATGTCTAAAGCAGTGGTTTCCAAGAGATTCTACTGCACCGATATCAGCTGCAACTTTCTCATGTGATAGCCAGCTGATATATGCCAGCTTTTTAGATGCATCAGTTTATGTATTCAGTGCTTCAAACCTCAGAATACGTTGTCGTATCAACCCTTCTGCTTATCTTGGTTCAAGTGTCAGCAATCCCAATGTACAACCACTCGTCGTCGCGGCACACCCTCAAGAACCAAATCAGTTTGCTGTGGGACTGTCGGATGGTGGAGTTCATGTGTTTGAGCCCCTAGAGTCTGAAGGGAAATGGGGTGTGCCCCCACCCATTGAGAATGGGTCAGCAAGCAATGTTGTGGCTACATCAGTTGGTGGTTCTTCAGATCAAGCCCAGAGATGA 3432 0.4248 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPAPLAGWMSNPTTVAHAAVSGGGAIGLGAPSIPDVSLPLAALKHPRTPPTNPSVDYPSGDSDHVSKRIRPMGMSDEVNLPVNVLPAAFPGHGHGQSFNAPDDLPKTVTRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVLRNFKVWDLSACSMPLQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSFQGGDDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDATTGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSASENGIKILANADGIRLLRTLENSLYEASRTSEAMAKPTINPISAAAAAAAAASSAALAERGPSVVAIAGMNGDARNMADVKPRITEESNDKSKIWKLTEINEPTQCRSMKLPENLRVTKISRLIYTNSGNAILALSSNAIHLLWKWQRSDRNSSGKATASVLPHLWQPSSGILMTNDISDSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHTKRITGLAFSHALNVLVSSGADAQICVWNTDGWEKQKTRFLQLPAGRTPTAQAETRVQFHQDQIHFLVVHETQLAIYETAKLECLKQWFPRDSTAPISAATFSCDSQLIYASFLDASVYVFSASNLRIRCRINPSAYLGSSVSNPNVQPLVVAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVVATSVGGSSDQAQR 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0132 1143 MobiDBLite consensus disorder prediction 1125 1143 - -
Sto1g0132 1143 Gene3D - 555 690 IPR015943 GO:0005515
Sto1g0132 1143 ProSiteProfiles Trp-Asp (WD) repeats profile. 608 639 IPR001680 GO:0005515
Sto1g0132 1143 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1143 IPR027728 GO:0006355
Sto1g0132 1143 SMART Lish 4 36 IPR006594 GO:0005515
Sto1g0132 1143 ProSiteProfiles Trp-Asp (WD) repeats profile. 929 970 IPR001680 GO:0005515
Sto1g0132 1143 ProSiteProfiles Trp-Asp (WD) repeats profile. 463 506 IPR001680 GO:0005515
Sto1g0132 1143 SMART WD40_4 922 961 IPR001680 GO:0005515
Sto1g0132 1143 SMART WD40_4 500 541 IPR001680 GO:0005515
Sto1g0132 1143 SMART WD40_4 456 497 IPR001680 GO:0005515
Sto1g0132 1143 SMART WD40_4 590 630 IPR001680 GO:0005515
Sto1g0132 1143 SMART WD40_4 1067 1107 IPR001680 GO:0005515
Sto1g0132 1143 SMART WD40_4 544 587 IPR001680 GO:0005515
Sto1g0132 1143 SMART WD40_4 350 389 IPR001680 GO:0005515
Sto1g0132 1143 SMART WD40_4 411 450 IPR001680 GO:0005515
Sto1g0132 1143 SMART WD40_4 1013 1054 IPR001680 GO:0005515
Sto1g0132 1143 SMART WD40_4 839 876 IPR001680 GO:0005515
Sto1g0132 1143 SMART WD40_4 879 919 IPR001680 GO:0005515
Sto1g0132 1143 MobiDBLite consensus disorder prediction 1114 1143 - -
Sto1g0132 1143 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Sto1g0132 1143 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Sto1g0132 1143 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 929 961 - -
Sto1g0132 1143 Gene3D - 338 552 IPR015943 GO:0005515
Sto1g0132 1143 ProSitePatterns Trp-Asp (WD) repeats signature. 484 498 IPR019775 -
Sto1g0132 1143 SUPERFAMILY WD40 repeat-like 844 1108 IPR036322 GO:0005515
Sto1g0132 1143 Gene3D - 784 1114 IPR015943 GO:0005515
Sto1g0132 1143 SUPERFAMILY WD40 repeat-like 357 672 IPR036322 GO:0005515
Sto1g0132 1143 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1143 - -
Sto1g0132 1143 SMART ctlh 34 92 IPR006595 -
Sto1g0132 1143 Pfam WD domain, G-beta repeat 928 961 IPR001680 GO:0005515
Sto1g0132 1143 Pfam WD domain, G-beta repeat 463 497 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0132 Sto-Chr1 920400 927558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0132 461 674 Miscellaneous Gene Families AT5G08390 23.744 1.14e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0132 - - gmx:100790282 2094.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0132 1 920400 927558 Sto1g0132 1 920400 927558 ECH