Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3710 ATGAGTGGTAGCCGTCTATTTTCCGGCGGAGGGTGGCTATTCAGGCAGATGTGTACGGCGGCGACAAAGCTGGCGGAAGCAGAGGTGGAACATTCGGGGGGAAAGTTACCCCTTTATCGAAGGTTATCATCGCTGCAAATGACAGGAGGGACCGTGTGTCAGACGTTAAACCAGTATATTATGGAGGGCAAAGCCATTAGGAAACAGGAGCTCCAACGGTGCGTCAGGGAGCTTCGAAAGTTTAGTCATTACCAACATGCACTCGAGGTAATGGAATGGATGGTTTTTAGGAGAATCAACTACTCCTACACTGACTTTGCAATGCATTTAGATCTCGTATCCTTAACCAAAGGAGTGGTAGAAGCTGAGAATTACTTCAACGATCTTCCTCCTCGATCCAAGAACAAATATACATATGGAACACTTTTGCATTGCTATTGCAGGAACTTAATGGCAGACAAGGCATTGGCACATTTTGAAAAGATGGATGAGCTTAAATATGTCAATAATCTGGCATTCAACAATCTCATGTCTATGTATATGAGACTAGGGACTTCAAATCTTGGTGAAGTTTATCGGGTATGGAAATCCCTCAAGTCTGTCAGTCCAGTGACCAACTTGAGCTATCTTACAATGCTTCAGAGCCTTCGAAGGCTTAATGATATTGAGGGTTTAACACAATGCTTTAAGGAGTGGGAATCTAGTTGTGCTAGTTATGATTTAAGGTTAGTCAATGTTGTTACAAGTGCCTACTTGAGTTGGGGAATGTGTGAAGAAGCTGAATTGTTATTTAAAAATGCCTTGAAGAGGAGGCAGGGTAGAGGACCTTTCTATAAGATTCATGAAATGTTCATACTCTTCTTCTTGGAGAATCGTAAGGTAGACCTGGCTGTGTGTCACCTAGAGACAGCTCTTTCAAAAGCCAAAGATGATGGATGGAGTCCTTCACCAGAAGTTGTAAGTGCTTTTCTGAAGTATTATGAACAAGTGAATGTTGACGGTGTTGAAAAGCTTCGCAACATTTTGAAGACGTTCaattttgatgataattttcttCTTAGAACTTGTATAAATGCTGACAAAACAGCTCATGGGTTACATCAAATATCCTTGAAGGAAGGATCTGAAATCAGCAGCCAGGGACGCGTGGACTTACTAGAGGAGATTAACTGA 1173 0.4169 MSGSRLFSGGGWLFRQMCTAATKLAEAEVEHSGGKLPLYRRLSSLQMTGGTVCQTLNQYIMEGKAIRKQELQRCVRELRKFSHYQHALEVMEWMVFRRINYSYTDFAMHLDLVSLTKGVVEAENYFNDLPPRSKNKYTYGTLLHCYCRNLMADKALAHFEKMDELKYVNNLAFNNLMSMYMRLGTSNLGEVYRVWKSLKSVSPVTNLSYLTMLQSLRRLNDIEGLTQCFKEWESSCASYDLRLVNVVTSAYLSWGMCEEAELLFKNALKRRQGRGPFYKIHEMFILFFLENRKVDLAVCHLETALSKAKDDGWSPSPEVVSAFLKYYEQVNVDGVEKLRNILKTFNFDDNFLLRTCINADKTAHGLHQISLKEGSEISSQGRVDLLEEIN 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3710 390 Gene3D Tetratricopeptide repeat domain 51 208 IPR011990 GO:0005515
Sto13g3710 390 TIGRFAM PPR: pentatricopeptide repeat domain 137 168 IPR002885 -
Sto13g3710 390 Pfam PPR repeat 137 165 IPR002885 -
Sto13g3710 390 Pfam PPR repeat 245 266 IPR002885 -
Sto13g3710 390 PANTHER OS12G0527900 PROTEIN 5 185 - -
Sto13g3710 390 PANTHER OS12G0527900 PROTEIN 184 380 - -
Sto13g3710 390 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Sto13g3710 390 PANTHER OS01G0301500 PROTEIN 5 185 - -
Sto13g3710 390 PANTHER OS01G0301500 PROTEIN 184 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3710 Sto-Chr13 39027857 39029734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3710 135 364 EF-hand Containing Proteins AT1G02150 29.339 3.37e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3710 - - sstn:125866189 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3710 13 39027857 39029734 Sto8g1098 8 6911442 6912440 CCT
Sto13g3710 13 39027857 39029734 Sto13g3710 13 39027857 39029734 ECH