Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3550 ATGGGTAGGGTTCTCCGAGAAACGTCAAAGCCGTCCTCAAATTCTTCATCCTCATTACCTTCTTCGGCACCTGCAACTACCTCATCGTCATCTATCACCGACACTATAAGGGGTTCTCACCAGTTCAAGATCACGGGCTATTCCTTATCAAAAGGGATCGGAATTGGAAAATATGTAGCCTCTGACACGTTTTCAGTCGGTGGGTATGAGTGGGCGATCTACTTTTACCCGGACGGGAAGAGTGTTGAGGACAATGCTACCTACGTGTCGCTGTTTATCGCCCTTGCCAGTGAGGGAACGGACGTTAGGGCTCTATTTGAGCTAACCCTTTTGGATCAGAGCGGGAAGGAGAGGCACAAGgttaatagtcattttgaaaggACGCTGGAAAGTGGGCCGTACACGTTAAAATACCGTGGTAGCATGTGGGGTTACAAGCGATTCTTCAAAAGAACAGTTCTGGAGACATCAGACTACCTTAAAGATGATTGCCTTAGTGTTACATGTAGTGTTGGTGTTGTGAGATCATATACAGAGGGCCCCAAAATATACTCCATAGCCATACCGCCTTCTAACATAGGTCAGCAATTTGGACGGCTACTTGATAGTGGAAAAGGAAGTGATGTGAGTTTTGAAGTTGATGGAGAAATTTTTGCTGCTCATAAATTGGTACTAGCAGCTCGTTCACCTGTTTTCAGAGCCCAACTTTTTGGTCCCATGAAAGATCAAAATACTCACTGTATAAAAGTTGAAGACATGGAGGCTCCAGTTTTTAAGGCATTGCTTCATTTTATATACTGGGACTCGCTTCCGGACATGCAAGAGCTTACTGGGCTGAACTCAAAATGGGCAACTACCTTGATGGCTCAGCATCTGCTAGCAGCAGCAGATAGGTATGGCTTAGAGCGGCTAAGGTTGATGTGTGAAGCTAATCTCTGTGAAGATGTTGCAATAAACACCGTGGCCACAACTTTAGCCTTGGCAGAGCAGCATCATTGTTTCCAATTAAAAGCAGTCTGTCTCAACTTTACTGCGAGGCCTGAAAATCTTAGAGCTGTGATGCAAACTGATGGTTTTGAGTACCTGAAGGAAAGTTGCCCTACTGTTCTGACTGAGCTATTGGAGTACGTGGCTAGATTTACTGAGCATTCGGATTTCATGTGCAAGCATAGGAATGAAGCGATCCTCGATGGCAGTGACATCAATGGTAGGCGGTTGTTCTTCTCGTACTTCAAAGACTTGGTGGGCAGAGAAGTGACGGTAGAGCTCAAGAACGACTTGGCGATCAGAGGGATCTTGCACTCGGTTGACCAGTACCTCAACATCAAGCTGGAGAACACTCGCGTTGTTGATCAAGATAAGTACCCCCACATGCTTTCTGTAAGGAACTGCTTCATCAGAGGGTCGGTGGTGAGATATGTGCAATTGCCACCAGAAGGAGTGGATATTGAACTATTGCATGATGCCACAAGGAGAGAAGCTCGAGGAGGCTAA 1494 0.4552 MGRVLRETSKPSSNSSSSLPSSAPATTSSSSITDTIRGSHQFKITGYSLSKGIGIGKYVASDTFSVGGYEWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVNSHFERTLESGPYTLKYRGSMWGYKRFFKRTVLETSDYLKDDCLSVTCSVGVVRSYTEGPKIYSIAIPPSNIGQQFGRLLDSGKGSDVSFEVDGEIFAAHKLVLAARSPVFRAQLFGPMKDQNTHCIKVEDMEAPVFKALLHFIYWDSLPDMQELTGLNSKWATTLMAQHLLAAADRYGLERLRLMCEANLCEDVAINTVATTLALAEQHHCFQLKAVCLNFTARPENLRAVMQTDGFEYLKESCPTVLTELLEYVARFTEHSDFMCKHRNEAILDGSDINGRRLFFSYFKDLVGREVTVELKNDLAIRGILHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDIELLHDATRREARGG 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3550 497 ProSiteProfiles MATH/TRAF domain profile. 37 171 IPR002083 GO:0005515
Sto13g3550 497 SMART BTB_4 207 316 IPR000210 GO:0005515
Sto13g3550 497 Pfam LSM domain 411 475 IPR001163 -
Sto13g3550 497 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1-LIKE 19 390 - -
Sto13g3550 497 Gene3D Potassium Channel Kv1.1; Chain A 183 310 IPR011333 -
Sto13g3550 497 SMART math_3 42 154 IPR002083 GO:0005515
Sto13g3550 497 MobiDBLite consensus disorder prediction 7 32 - -
Sto13g3550 497 CDD BTB_POZ_BPM_plant 193 313 - -
Sto13g3550 497 Pfam BTB/POZ domain 198 314 IPR000210 GO:0005515
Sto13g3550 497 SMART Sm3 409 476 IPR001163 -
Sto13g3550 497 CDD MATH 38 171 IPR002083 GO:0005515
Sto13g3550 497 SUPERFAMILY TRAF domain-like 35 173 - -
Sto13g3550 497 ProSiteProfiles BTB domain profile. 207 266 IPR000210 GO:0005515
Sto13g3550 497 CDD LSm2 406 494 IPR016654 GO:0006397
Sto13g3550 497 SUPERFAMILY POZ domain 184 314 IPR011333 -
Sto13g3550 497 MobiDBLite consensus disorder prediction 1 32 - -
Sto13g3550 497 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 175 IPR008974 GO:0005515
Sto13g3550 497 Gene3D - 401 496 - -
Sto13g3550 497 CDD BACK_AtBPM-like 313 376 IPR034090 -
Sto13g3550 497 Gene3D - 316 392 - -
Sto13g3550 497 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 19 390 IPR045005 GO:0016567
Sto13g3550 497 SUPERFAMILY Sm-like ribonucleoproteins 407 495 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3550 Sto-Chr13 38127689 38144348 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3550 K10523 - sspl:121755946 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0568 8 3481635 3485435 Sto13g3550 13 38127689 38144348 CCT
Sto13g3550 13 38127689 38144348 Sto13g3550 13 38127689 38144348 ECH