Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3400 ATGCATTATTGGCAGGCTCTGAGCCAGAGCGATGGAAGATGGCGCTACAGCTCTGATAACCCAGAGTCTAGTACCTTTGCTGCTGGATTAGCTCTTGAAGCATTTGCTGGAGTGATCACACTAGCATCTTCTGAAATAGATCAGTCTAGGATCAATACGGTGAAAAATGATATATTGAAGCTTTTTGACAGCATTGAGAAATATGGTATGTATGATGGAACATTTTATTTTGATGAGAAAATTGTTGGTGGACGTGAGCCTCAGGGTTCTCTTTCTACTACTGCTTCAGTTGTTCGAGGGCTTGCAGCATTTACTGCTGTAACTTCTGGAAAATTAAATCTTCCAGGAGATAAAATATTGGGTTTAGCAAAATTCTTCCTGGGTATTGGAATCCCAGGAGATGCAAAGGACTTCTTCAACCAAATAGAATCATTAGCTCTTCTAGAGAACAACAGGGTTTCCACCCCACTGATATTGTCGCTTCCCACAACTGTTTTTTCATTGACAAAGAAAGACCAGCTCAAGGTTAAGGTAAATACAGTGCTTGGTTCAGCTGCACCACCTTTAACAGTTAAACTTGTCCGAGCGTTCAGCACTGATGCTAAAGATATTTCTATTATTGAGAGCAAGGAGCTTCAGTATGACTCAAAAAGTGGACTTCATGTCTTGGATGTTTTCCAGAAGAATGTGGATGTTGGAACTTATGTGTTTGTTTTTGAGGTGGTACTTCATGAATCTGATAATGACAAAGTATATGCTACTGGAGGCCAAATCCATGTGCAAATATATGTCACTGGAATTATCGAAGTTGGCAGTGCAGAAATTGCCATTCTAGACAGTGATCTTGGAAGTATTGAAACCCAGAAAaaGCTAGATTTGTCTGGAAATAATGTCGTGTCACTCTCAGCTAATCACCTGCAGAAGTTGCGCCTGTCTTTTCAATTGACAACACCCCATGGTCATGCTTTTAAGCCACATCAGGCTTTTCTTAAGTTGAGACATGAGACAAAGGTTGAACACATCTTTGCAGTTGGAAATACTGGCGAGAAGTTTGAGATAATTCTTGATTTTCTTGGCTTGGTGGATAAACTTTTTTATCTCTCGGGAAGATATGACATTGAGCTGACTGTTGGTGATGCTGTCATGgagaACTCTTTCTTACGGCCTCTTGGCCATGTTGAATTAGATCTTCCAGAAGCACCAGAGAAGGCAGCTCGTCCTCCTCCTCCACCTGTTGATCCTTATTCAAGATATGGACCCAAAGCAGAGATAACCCACTTGTTCAGGGCTCCTGAAAAGCGACCACCCCAGAAACTCTCTCTAGCATTCTTGAGTTTGACACTTTTGCCACTGATTGGCTTTTTGGTTGGTCTGCTGCGAGTAGGGGTGAACCTGAAGAACTTCCCTACATCAGTACATGCTATATATGCTGCTCTCTTCCATGTTGGCATTGCTGCAGTTCTGTTGCTTTATGTACTTTTCTGGTTGAAGCTGGACCTATTCACCACACTCAAAACACTTGGTCTTTTGGGAGCTTTTTTGATGTTTGTGGGACACAAAACTCTCTCCTATCTTGCATCTACATCATCCAAGTTGAAGTCTGCATGA 1608 0.4167 MHYWQALSQSDGRWRYSSDNPESSTFAAGLALEAFAGVITLASSEIDQSRINTVKNDILKLFDSIEKYGMYDGTFYFDEKIVGGREPQGSLSTTASVVRGLAAFTAVTSGKLNLPGDKILGLAKFFLGIGIPGDAKDFFNQIESLALLENNRVSTPLILSLPTTVFSLTKKDQLKVKVNTVLGSAAPPLTVKLVRAFSTDAKDISIIESKELQYDSKSGLHVLDVFQKNVDVGTYVFVFEVVLHESDNDKVYATGGQIHVQIYVTGIIEVGSAEIAILDSDLGSIETQKKLDLSGNNVVSLSANHLQKLRLSFQLTTPHGHAFKPHQAFLKLRHETKVEHIFAVGNTGEKFEIILDFLGLVDKLFYLSGRYDIELTVGDAVMENSFLRPLGHVELDLPEAPEKAARPPPPPVDPYSRYGPKAEITHLFRAPEKRPPQKLSLAFLSLTLLPLIGFLVGLLRVGVNLKNFPTSVHAIYAALFHVGIAAVLLLYVLFWLKLDLFTTLKTLGLLGAFLMFVGHKTLSYLASTSSKLKSA 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3400 535 Pfam Oligosaccharyltransferase subunit Ribophorin II 4 527 IPR008814 GO:0006487|GO:0008250|GO:0016021
Sto13g3400 535 PANTHER RIBOPHORIN II 5 535 IPR008814 GO:0006487|GO:0008250|GO:0016021
Sto13g3400 535 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2 5 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3400 Sto-Chr13 37213431 37218395 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3400 K12667 - gmx:100780415 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0721 8 4544790 4552210 Sto13g3400 13 37213431 37218395 CCT
Sto13g3400 13 37213431 37218395 Sto13g3400 13 37213431 37218395 ECH