Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3344 ATGGAGGAAGCGCTCGAGCTTGCACGCGCCAAGGACACCAAGGAGAGGATGGCCGGTGTGGAGCGACTATATCAGTTATTGGAAGCTTCCAGAAAGAGCCTCACTTCTTCTGAGGTTACTTCCCTCGTCGATTGTTGCTTGGATCTCTTGAAAGATAACAACTTCAAGGTTTCCCAGGGTGCCCTTCAAGCTTTGGCCTCTGCAGCCGTGCTCTCCGGCGAACATTTCAAACTTCATTTCAATGCGCTTGTTCCCGCCGTAGTCGACCGCTTAGGCGATGCCAAACAACCTGTTCGTGATGCCGCTAGACGACTCTTGCTCACACTTATGGAGgtTTCTTCCCCTACAATAATTGTGGAAAGAGCAGGATCCTTTGCTTGGACACACAAAAGCTGGAGGGTTAGAGAGGAGTTTGCACGAACTGTCACATCTGCAATTGGTCTATTTTCATCTACTGAGCTTACCCTTCAACGCGTTATTCTTCCTTCAATTTTGCAGTTGCTGAATGATCCAAATCCTGGTGTTAGGGAAGCAGCTATTTTGTGCATTGAGGAGATGTATGCACAAGCTGGTCCCAATTTTCGTGATGAACTTCAGCGCCACAACCTTCCTCTGTCTTTGGTGAAGGATATTAATGCTAGGCTAGAGGGCATTCAACCAAAAATCCGTTCTTCGGATGGTTTATCAGGTGGTTTTGTCACGGGAGAAATTAAGCCTTTGAGCTTTAATTCCAAGAAAAGTAGTCCAAAAGCTAAAAGTTCATCAAGGGAGAACTCTATTTTTGGAGGAGATGGCGATGTCACAGAGAAACCCATAGACTCCATCAAGGTGTACTCGGAGAAGGAGTTAATCAGGGAAATTGATAAGATTGCATCTACCCTTGTACCAGAAAAGGACTGGTCGATTCGTATCGCTGCTATGCAAAGAGTTGAAGGTCTTGTTTTGGGAGGTGCTACTGACTATCCATGTTTTCGGGGACTCCTGAAGCAACTTGTTGGACCCTTGAGCGTACAATTATCAGATAGAAGGTCTAGCATTGTGAAGCAGGCTTGCCATCTGTTGTGCTTTTTGTCAAAGGAGCTCTTAGGTGATTTTGAAGCTTGTGCTGAAATGTTTATACCAGTCCTTTTCAAGCTGGTTGTGATTACTGTACTTGTAATTGCAGAGTCTGCTGATAACTGCATAAAGACGATGTTGCGTAACTGCAAAGTTGCCCGTGTGCTTCCTCGTATAGCTGATTGTGCAAGAAATGATCGCAGTGCAGTACTTCGTGCGAGGTGTTGTGAATATGCACTTTTGATATTAGAACATTGGCCTGATGCACCAGAAATACAGCGATCAGCTGATTTATATGAGGATCTGATAAGGTGCTGTGTTTCAGATGCAATGAGTGAGGTACGGTCTACGGCAAGGATGTGTTATAGAATGTTCGCAAAAACTTGGCCAGAGCGTTCCCGTCGCCTATTTTCGTCCTTTGACCCAGTTATTCAAAGGTTAATAAATGAAGAGGATGGAGGAATACATAGGCGACATGCTTCACCTTCCATTCGTGACAGAGGTGCATTGGTGTCATTAAGTAGCCAAGCCTCTGCTCCTTCTAATCTGCCTGGATATGGAACTTCTGCTATCGTTGCAATGGACAGAAATTCTAGTTTGTCATCAGGAACGTCTGTCTCCTCTGGTGTACTTCTTTCACAAGCAAAATCACTTGGTAAAGGTGCAGAACGTAGTTTGGAAAGTGTGTTGCATGCAAGCAAACAGAAGGTTACTGCCATTGAAAGCATGCTTAGAGGTTTGGATTTGTCTGATAGACATAGTTCTGCTCTCCGGTCATCAAGTTTGGATCTAGGAGTTGACCCTCCATCATCTCGTGATCCACCATTCCCCGCTGCTGGATCAACATCTAATCATCTAAAAAATTCTTTAACAACCGAATCAATTGTTTCCAGTGTCCATAAAGGTAGCAACCGAAATGGCAGTTTGGGATTGTCTGACATAATTTCACAAATTCAAGCTTCTAAAAACTCTGGCAAGTTATCTTATCATAGTAATGTTGGTATTGAGCCTTTATCAGCACTTTCATCATATTCAAGTAAAAGGGCTTCTGAAAGACTACAAGAAAAAAGTTCCATTGAAGACAACAGTGACATTAGGGAGGCTAGGCGATTTATGAACCCCAACATGGACAGGCAGTATCTGGATACTCCTTATAGAGATGGAAACTTTAGGGATTCACATAATAGTTATGTGCCTAATTTCCAGAGGCCACTATTAAGAAAGAATGTAGCTGGACGCATGTCTGCTGGCAGGAGGAGAAGTTTTGATGATAGCCAGCTTTCTCTGGGAGATGTGTCAAATTATGTAGTTGGACCGGCATCTCTCCATGAGGCTCTGAGTGAAGGACTTAGTTCAGGTTCTGACTGGTCTGCTAGGGTTGCTGCTTTTAATTATCTTCACTCTTTGTTACAACAAGGTCCAAAAGGAATTCAAGAAGTGGTCCAGAATTTTGAGAAGGTAATGAAGTTGTTTTTCCAGCATTTAGATGATCCCCACCATAAAGTTGCACAGGCTGCTCTTTCGACACTAGCAGATATTATTCCAGCATGCCGAAAGCCCTTTGAGAGTTATATGGAAAGAATGCTACCACATGTGTTTTCTCGGTTAATTGATCCAAAAGAGCTTGTCAGGCAACCATGCTCAACGGCTTTGGAAGTTGTTAGCAAAACTTACAGTATAGATTTGCTCCTACCTGCATTACTACGCTCACTTGATGAACAAAGGTCTCCTAAGGCAAAATTAGCTGTTATTGAGTTTGCAATCACTTCATTTAATAAGCACTCAATGAATCCAGAAGGTGCTGCTAATACTGGCATTCTCAAATCATGGCTTTCCAAGTTAACTCCGTTGGTTCATGACAAAAATACGAAGCTTAAAGAAGCAGCCATTACTTGCATTATATCAGTGTACTCCCACTTTGATTCGACTGCACTTCTGAATTTTATTCTTAGTTTGTCAGTTGAAGAACAAAACTCATTGAGACGAGCCCTTAAACAGTACACTCCTCGCATTGAAGTAGACCTAATGAACTATCTGCAGACCAAGAAAGATCGACAACAACGTACTAAGTCTTCGTATGATCCATCTGATGTTGTTGGAACATCCTCTGAAGAGGGATATGTTGGTTTGTCTAGGAAAGCTAATTACCTTGGAAGGTATTCTGCGGGTTCTCTCGATAGTGATGGTGGTAGGAAGTGGAGTTCCCAAGATTCAACCCTGGTTAAAGCCAGTCTTTACCTagcagcttctagtgaaagtcAGGGACATTCATATCAAAATCATGAGACTGATTCTATTAGTGTCAATCCAGTGGGCCCAAATTTTGGATCTCATAATGGGCATCTTGGACATTTAGATAGTAGCATGAACTATGAGGATCTGTCAACTTCTAATCTGGATGTTAATGGTCAGATGTCTTTAGAACATTTAAATATTCCCGAAGGCTTTGGACATGAAAAAGAACATGCTTCTGAATTGGACCTTAATCATCACTCATATGAAGCTGTGAAGATTAACTCCTTGAAAGATGCGGAGCCTGGCATTCCTCAAATTCTACATCTGATATGCAATGGTggtgctggaagccctatttcAAGCAAGCACACTGCACTTCAACAGTTAGTTGAAGCTTCTATAACAAATGATCATTCTGTTTGGACTAAGTACTTTAATCAGATTTTAACAATTGTGCTTGAGGTGTTGGATGATTCAGACTCCTCAGTTAGAGAGCTTGCTCTTTCACTAATAGTTGAAATGCTGAAAAACCAGAAAGATGCCATGGAAGAATCAGTTGAGATTGTAATTGAGAAGCTGCTTCATGTTACAAAGGATACTGTTCCCAAGGTCTCAAATGAAGCAGGGCACTGCCTGACTATTGTTTTATCTCAGTATGATCCATTCAGATGTTTAAGTGTTATTGTCCCTTTACTGGTTACGGAGGATGAGAAGACTCTTGTTACTTGCATAAATAGCTTGACAAAGCTTGTCAGCCGGCTTTCTCAGGAGGAATTGATGACTCAGTTACCCTCTTTTCTGCCTGCTCTTTTTGAAGCTTTTGGAAACCAGAGTGCAGATGTTCGTAAGACGGTTGTTTTCTGTCTTGTGGATATCTATATTATGCTTGGGAAAGCATTCTTACCTTACTTGGAAGGCCTTAACAGCACACAGTTGAAGTTGGTCACCATTTATGCAAATCGAATCTCACAGGCCAGGACAGGCACGCCAATTGATGCCGCCCATGATTAG 4302 0.4193 MEEALELARAKDTKERMAGVERLYQLLEASRKSLTSSEVTSLVDCCLDLLKDNNFKVSQGALQALASAAVLSGEHFKLHFNALVPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSFAWTHKSWRVREEFARTVTSAIGLFSSTELTLQRVILPSILQLLNDPNPGVREAAILCIEEMYAQAGPNFRDELQRHNLPLSLVKDINARLEGIQPKIRSSDGLSGGFVTGEIKPLSFNSKKSSPKAKSSSRENSIFGGDGDVTEKPIDSIKVYSEKELIREIDKIASTLVPEKDWSIRIAAMQRVEGLVLGGATDYPCFRGLLKQLVGPLSVQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCARNDRSAVLRARCCEYALLILEHWPDAPEIQRSADLYEDLIRCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPVIQRLINEEDGGIHRRHASPSIRDRGALVSLSSQASAPSNLPGYGTSAIVAMDRNSSLSSGTSVSSGVLLSQAKSLGKGAERSLESVLHASKQKVTAIESMLRGLDLSDRHSSALRSSSLDLGVDPPSSRDPPFPAAGSTSNHLKNSLTTESIVSSVHKGSNRNGSLGLSDIISQIQASKNSGKLSYHSNVGIEPLSALSSYSSKRASERLQEKSSIEDNSDIREARRFMNPNMDRQYLDTPYRDGNFRDSHNSYVPNFQRPLLRKNVAGRMSAGRRRSFDDSQLSLGDVSNYVVGPASLHEALSEGLSSGSDWSARVAAFNYLHSLLQQGPKGIQEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPACRKPFESYMERMLPHVFSRLIDPKELVRQPCSTALEVVSKTYSIDLLLPALLRSLDEQRSPKAKLAVIEFAITSFNKHSMNPEGAANTGILKSWLSKLTPLVHDKNTKLKEAAITCIISVYSHFDSTALLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQTKKDRQQRTKSSYDPSDVVGTSSEEGYVGLSRKANYLGRYSAGSLDSDGGRKWSSQDSTLVKASLYLAASSESQGHSYQNHETDSISVNPVGPNFGSHNGHLGHLDSSMNYEDLSTSNLDVNGQMSLEHLNIPEGFGHEKEHASELDLNHHSYEAVKINSLKDAEPGIPQILHLICNGGAGSPISSKHTALQQLVEASITNDHSVWTKYFNQILTIVLEVLDDSDSSVRELALSLIVEMLKNQKDAMEESVEIVIEKLLHVTKDTVPKVSNEAGHCLTIVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINSLTKLVSRLSQEELMTQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLEGLNSTQLKLVTIYANRISQARTGTPIDAAHD 1433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3344 1433 SUPERFAMILY ARM repeat 289 1423 IPR016024 -
Sto13g3344 1433 MobiDBLite consensus disorder prediction 611 639 - -
Sto13g3344 1433 MobiDBLite consensus disorder prediction 242 261 - -
Sto13g3344 1433 Gene3D - 796 1020 IPR011989 -
Sto13g3344 1433 Gene3D - 1 221 IPR011989 -
Sto13g3344 1433 Gene3D - 1216 1424 IPR011989 -
Sto13g3344 1433 Coils Coil 1269 1289 - -
Sto13g3344 1433 Pfam HEAT repeat associated with sister chromatid cohesion 1244 1268 IPR026003 -
Sto13g3344 1433 SMART TOG_3 780 1025 IPR034085 -
Sto13g3344 1433 SMART TOG_3 3 224 IPR034085 -
Sto13g3344 1433 SMART TOG_3 282 514 IPR034085 -
Sto13g3344 1433 SMART TOG_3 1192 1425 IPR034085 -
Sto13g3344 1433 MobiDBLite consensus disorder prediction 242 265 - -
Sto13g3344 1433 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Sto13g3344 1433 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Sto13g3344 1433 Pfam CLASP N terminal 57 187 IPR024395 -
Sto13g3344 1433 Pfam CLASP N terminal 285 500 IPR024395 -
Sto13g3344 1433 Pfam CLASP N terminal 802 996 IPR024395 -
Sto13g3344 1433 PANTHER CLASP 28 1425 - -
Sto13g3344 1433 Coils Coil 10 30 - -
Sto13g3344 1433 SUPERFAMILY ARM repeat 5 402 IPR016024 -
Sto13g3344 1433 Gene3D - 267 506 IPR011989 -
Sto13g3344 1433 PANTHER PROTEIN, PUTATIVE-RELATED 28 1425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3344 Sto-Chr13 36841505 36853544 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3344 K16578 - gmx:100796697 2362.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0782 8 4949952 4961579 Sto13g3344 13 36841505 36853544 CCT
Sto13g3344 13 36841505 36853544 Sto13g3344 13 36841505 36853544 ECH