Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3332 ATGGGTATCATCTCTTTGGTGACGGGGAGGCCCGGCCCAACTGGTTTTGGCTCAGCTTCAACGGCAGAACAGGTTACCGAAGGAATTGATGCCTCCAATCTCACTGCCATTATCACAGgAGGAGCAAGTGGAATTGGGTTAGAGACAGCAAGAGTGTTGGCTCTTCGAAAGGTCCATGTCATAATTGCTGCTAGGAACATGGAAGCTTCCAAGAAAGCTAAGAAACTTATTCTGAGCCAAAACCAGTCTGCTCGAGTGGATATACTAAAGCTCGATCTCTCCTCTGTCAAATCTGTCAGAGCATTTGTTGACAACTTCCTCGCTCTTGATCTTCCTCTCAACATCTTaatAAACAATGCTGGAGTCATGTTCTGCCCTTTTCATCTCTCTGAAGACGGGATTGAAATGCAATTTGCAACGAATCATATTGGTCACTTCCTCTTGACCAATCTTCTTCTTGACAAAATGAAACAAACAGCCAAAGCCAGTGGAATTGAAGGAAGGATTGTGAATCTGTCATCAGTTGCTCACACCTACACTTACCGAAAGGGGATTCGATTCAATGGGATCAATGATAAAAGCAGTTACTCCGACAAAAAAGCATATGGGCAATCCAAATTAGCTAACATTTTACACGCAAATGAGCTGTCTCGCCGCCTTCAGGAAGAGGGTGTGAACATTACAGCCAATTCGGTCCACCCAGGAGTGATAATGACTCCTCTCATGAGACATTCTTCCTTCCTTATGCATCTCTTAAAAGTTTTCACCTTTTACATATGGAAGAACGTCCCGCAGGGAGCAGCCACCACGTGCTATGTTGCTCTTCACCCACGCGTAAAAGGCGTATCTGGGAAGTACTTCGTGGATTGTAATGAACAAAAGCCAAGTTCTTTTGCAACCAATCAAAAGCTAGCAAGCAAACTCTGGGATTTCAGCCACAAGCTCATCAATTCACTTTCAAAACCTTAA 969 0.4407 MGIISLVTGRPGPTGFGSASTAEQVTEGIDASNLTAIITGGASGIGLETARVLALRKVHVIIAARNMEASKKAKKLILSQNQSARVDILKLDLSSVKSVRAFVDNFLALDLPLNILINNAGVMFCPFHLSEDGIEMQFATNHIGHFLLTNLLLDKMKQTAKASGIEGRIVNLSSVAHTYTYRKGIRFNGINDKSSYSDKKAYGQSKLANILHANELSRRLQEEGVNITANSVHPGVIMTPLMRHSSFLMHLLKVFTFYIWKNVPQGAATTCYVALHPRVKGVSGKYFVDCNEQKPSSFATNQKLASKLWDFSHKLINSLSKP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3332 322 CDD retinol-DH_like_SDR_c_like 35 309 - -
Sto13g3332 322 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Sto13g3332 322 PRINTS Glucose/ribitol dehydrogenase family signature 111 122 IPR002347 -
Sto13g3332 322 PRINTS Glucose/ribitol dehydrogenase family signature 161 177 IPR002347 -
Sto13g3332 322 PRINTS Glucose/ribitol dehydrogenase family signature 225 242 IPR002347 -
Sto13g3332 322 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 4 319 - -
Sto13g3332 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 111 122 IPR002347 -
Sto13g3332 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 175 IPR002347 -
Sto13g3332 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
Sto13g3332 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 294 IPR036291 -
Sto13g3332 322 Gene3D - 25 319 - -
Sto13g3332 322 Pfam short chain dehydrogenase 35 244 IPR002347 -
Sto13g3332 322 PANTHER RETINOL DEHYDROGENASE 4 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3332 Sto-Chr13 36766995 36768619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3332 16 295 Acyl Lipid Metabolism Gene Families AT3G46170 25.085 7.75e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3332 K11153 - gmx:100801849 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0795 8 5032744 5033189 Sto13g3332 13 36766995 36768619 CCT
Sto13g3332 13 36766995 36768619 Sto13g3332 13 36766995 36768619 ECH