Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3125 ATGCCCGATGCGAGTGTTGGTTACACCGTTGCACCACACGAAACAAAAAGGACTTTCCATGTTGTGCACGGAGCCaGTTTCTTTCCTGCAATGACGAGAATCGTCGGTACACTCGGTCCCAAATCTCGAACAACATCGACTATTTCTGGCTGTCTCCAGGCTGGAATGTCTGtggctCGTTTCGACTTTTCTTGGGGTAACTCAGAGTATCACCAGGAGACCTTGGAGAATTTGAAGACTGCAATGAGGAGTACTAAGAAGCTTTGTGCTGTTATGCTGGACACGGTGGGTGCAGAGATGCAGGTTGTTAACAAAAGTGAGAAACCTATCACACTTCAGGCAAATGGTATTGTTGTTTTGACTCCATCCAAGGGACAAGAAGCTTCTTCAGAGATATTGCCCATCAGTTTTGATGGACTAGCAAAGTCAGTGAAGAAGGGCGATACCATTTTTGTTGGTCAATACTTGTTCACCGGAAGTGAAACTACTTCTCTATGGCTAGAGGTATCTGAAGTCAAAGGGCAAGATGTCGTTTGTGTTATAAAGAACTCGGCAACACTGGCTGGGGCATTGTTCACTTTGCATGCCTCTCAAGTTCATATTGATTTGCCCACCCTTACAGAGAAAGACAAGGAGGTTATAAGCACTTGGGGAGTTAAAAACAAAATCGATTTTATATCATTGTCTACTACTCGGCATGCAGAAGATGTTCGCCAGGCTCGTGAATTCCTCTCTAAGTTAGGCGATCTCAGCCAGACTCAAATTATGGCAAAGATTGAAAATGTTGAGGGATTGACCCATTTTGATGAGATCCTAGAAGAAGCTGATGGTATTATCCTTTCCCGTGGGAATTTGGGCATTGATCTCCCACCTGAGAAGgtatttttatttcaaaaatctGCTCTTTACAAGTGTAATATGGCTGGGAAACCTGCTGTGCTTACGCGTGTGGTGGATAGCATGACTGACAACTTAAGACCAACTCGTGCAGAAGCCACCGATGTTGCTAATGCTGTTTTAGAtgGAAGTGACGCAATACTTCTGGGTGCGGAGACACTTCGTGGGTTATATCCCATTGAGACTATTTCAACTGTTGGCAGAATTTGTGCAGAGGCGGAGAAAGTTTTCAACCAAGACCTCTATTTTAAGAAGGCTGTCAAACATGTTGGAGAACCAATGACCCACTTGGAATCTATTGCATCCTCTGCGGTGCGGGCAGCTATTAAGGTGAAGGCTTCTGTTATCATTTGCTTTACTTCATCTGGAAGGGCTGCAAGATTAATAGCTAAGTATAGGCCTACGATGCCAGTTCTTTCTGTTGTGGTCCCTCGACTTATGACAAATCAGATAAAGTGGAGCTTTACTGGAGCGTTTGAGGCAAGGCAATCACTTATTGTGAGAGGTCTCTTCCCCATGCTTGCTGATCCTAGACATCCTGCGGAGTCAACAAGTGCAACGAATGAGTCAATTCTGAAGGTTGCGCTTGATCATGGAAAAGCATCAGGAGTTATAAAGTCACGTGATCGGGTTGTTGTTTGCCAGAAAGTTGCCTCTGCTTCTCCAGCTCGTACGCTTGTATTTGATACTTTACTTGCTGCTCTTCCAATTGTATCACCTTCGTCTTCATCCACTGCTTCTTCTCCCACTCGCTCTTCCCTCCGTCCTCGAACACACCCCTCACTTCCCCCTTCAATTCCTGCATCAACTCCGACGACACGCATAACGCCGCCTTCCTTCTCTTCCGCGACGACGACCACCTCCCTATTCCCTCCTCATCTTCTTGCTCGTTTCCATTTTGAACCCTTGACCCTCCTTCTACCGAttctccttcctcctcctccGTAA 1845 0.4477 MPDASVGYTVAPHETKRTFHVVHGASFFPAMTRIVGTLGPKSRTTSTISGCLQAGMSVARFDFSWGNSEYHQETLENLKTAMRSTKKLCAVMLDTVGAEMQVVNKSEKPITLQANGIVVLTPSKGQEASSEILPISFDGLAKSVKKGDTIFVGQYLFTGSETTSLWLEVSEVKGQDVVCVIKNSATLAGALFTLHASQVHIDLPTLTEKDKEVISTWGVKNKIDFISLSTTRHAEDVRQAREFLSKLGDLSQTQIMAKIENVEGLTHFDEILEEADGIILSRGNLGIDLPPEKVFLFQKSALYKCNMAGKPAVLTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPIETISTVGRICAEAEKVFNQDLYFKKAVKHVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVLSVVVPRLMTNQIKWSFTGAFEARQSLIVRGLFPMLADPRHPAESTSATNESILKVALDHGKASGVIKSRDRVVVCQKVASASPARTLVFDTLLAALPIVSPSSSSTASSPTRSSLRPRTHPSLPPSIPASTPTTRITPPSFSSATTTTSLFPPHLLARFHFEPLTLLLPILLPPPP 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3125 614 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 25 377 IPR015813 GO:0003824
Sto13g3125 614 SUPERFAMILY PK C-terminal domain-like 360 516 IPR036918 -
Sto13g3125 614 SUPERFAMILY PK beta-barrel domain-like 105 188 IPR011037 -
Sto13g3125 614 Gene3D - 32 372 IPR040442 -
Sto13g3125 614 Pfam Pyruvate kinase, alpha/beta domain 397 519 IPR015795 -
Sto13g3125 614 PANTHER PYRUVATE KINASE 25 521 - -
Sto13g3125 614 Gene3D - 98 204 IPR015806 GO:0004743|GO:0006096
Sto13g3125 614 PANTHER PYRUVATE KINASE 25 521 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Sto13g3125 614 Pfam Pyruvate kinase, barrel domain 32 377 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Sto13g3125 614 Gene3D - 373 516 IPR036918 -
Sto13g3125 614 TIGRFAM pyruv_kin: pyruvate kinase 32 519 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Sto13g3125 614 PRINTS Pyruvate kinase family signature 87 103 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Sto13g3125 614 PRINTS Pyruvate kinase family signature 223 237 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Sto13g3125 614 PRINTS Pyruvate kinase family signature 255 281 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Sto13g3125 614 PRINTS Pyruvate kinase family signature 282 306 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Sto13g3125 614 PRINTS Pyruvate kinase family signature 331 349 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Sto13g3125 614 PRINTS Pyruvate kinase family signature 350 366 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Sto13g3125 614 MobiDBLite consensus disorder prediction 538 558 - -
Sto13g3125 614 MobiDBLite consensus disorder prediction 538 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3125 Sto-Chr13 35588202 35595969 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3125 K00873 - gmx:100801466 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2506 8 17334683 17336999 Sto13g3125 13 35588202 35595969 CCT
Sto13g3125 13 35588202 35595969 Sto13g3125 13 35588202 35595969 ECH