Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3112 ATGATCACATTTGGAAAGGTCTTCTGTACAAAAAGCAAACCAAATTGTAATGCATGTCCAATGAGAGGAGAATGCAGACACTTTGCAAGTGCATTTGCAAGTGCAAGGCTTGCCCTGCCAGGACCTGAGCAAAATAGTATAATTAGCACAGCTGGAAACAATTTGACTAATCAGAACCCGTCTATCATTGCCAATCAGTTGCCCTGGCCTCTCCCTTTACACACAAACCAAGCAGAAGAAATTCAACAAACAGAAGTGAGCAGGCAACTGGAAGCAAAATCTGAAATCAATATCTGCCAGCCTATCATTGAAGAGCCAGCTACACCAGAGCCTGAATGTACACAAGTAGCAAACTATGATATAGAGGATGCCTTCTATGAAGATCCTTGTGAAATTCCTACCATCAAACTTAACTTCGAAGAGTTCACTCTGAATGTACAAAGTTATGTGCAAGAAAACATGGAACTTCAAGCAGGTGAAATGTCCAAGGCCCTAGTTGCCTTAACCCCAGAAGCTGCTTCCATTCCTGCACCCAAGCTAAAGAATGTGAGCCAACTACGAACAGAGCACTGTGTTTACGAACTCCCAGATTCACATCCTCTTCTGCAAGGGTGGGACAAGCGAGAACCTGATGACCCATGCAAATACCTTCTAGCTATATGGACGCCAGGTGAAACGGAAAGTTCTATTCAGCCACCTGAACACAAATGCAGCTCCCAAGAATGTGGCCAACTTTGTAACAAGAAGGAGTGTTTCCCATGCAACAGTATCCGTGAAGCAAATTTGCAGATAGTTCGAGGGACATTCCTGATTCCATGTCGAACAGCTATGCGAGGGAGCTTTCCACTAAATGGCACCTATTTTCAAGTGAATGAGGTGTTTGCTGACCATGACTCAAGTCTAAACCCAATTAACGTCCCCCGAAGTTGGATCTGGAATCTCAATAGGAAAACGGTATATTTTGGAACTTCCATACCATCAATATTTAAAGGTTTGTCAACACCAGAAATTCAGCAATGCTTTTGGAGAGGTAAGATTTAG 1041 0.4313 MITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQNSIISTAGNNLTNQNPSIIANQLPWPLPLHTNQAEEIQQTEVSRQLEAKSEINICQPIIEEPATPEPECTQVANYDIEDAFYEDPCEIPTIKLNFEEFTLNVQSYVQENMELQAGEMSKALVALTPEAASIPAPKLKNVSQLRTEHCVYELPDSHPLLQGWDKREPDDPCKYLLAIWTPGETESSIQPPEHKCSSQECGQLCNKKECFPCNSIREANLQIVRGTFLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPINVPRSWIWNLNRKTVYFGTSIPSIFKGLSTPEIQQCFWRGKI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3112 346 SMART ccc3 8 28 IPR003651 GO:0051539
Sto13g3112 346 Gene3D - 1 37 IPR023170 -
Sto13g3112 346 PANTHER ROS1, PUTATIVE-RELATED 1 345 - -
Sto13g3112 346 Pfam Permuted single zf-CXXC unit 233 264 IPR028924 -
Sto13g3112 346 Pfam RRM in Demeter 267 345 IPR028925 -
Sto13g3112 346 SUPERFAMILY DNA-glycosylase 1 30 IPR011257 GO:0003824|GO:0006281
Sto13g3112 346 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 1 345 IPR044811 GO:0019104|GO:0035514|GO:0080111
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3112 Sto-Chr13 35507014 35509340 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3112 - - ccaj:109810540 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2518 8 17465970 17475324 Sto13g3112 13 35507014 35509340 CCT
Sto13g3112 13 35507014 35509340 Sto13g3112 13 35507014 35509340 ECH