Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2580 ATGGCTTCATCGGAGATCGAGGTGGTATCATCGGACCCCAAAACCCCGAAAATTCCCAATGAACCTCCCGTTGTCGATGTGTATTCTGCCTGTACTTATGGGGACTTTGTGAAATTGAGGAAGTTTGTGGAACAAGATGGTGCCTCCGTTTCTGTACCTGATGCCAATGGCTATTATGCTCTTCAGTGGGCATCCCTTAGCAACTTCCCAGATATTGTACAGTATGTCATTAAGCATGGGGGTGATGTCAATGCTACTGACCTCATGCAACAGACGGCTCTACACTGGGCTGCAGTTCGTGGTTCAACTACAGTGGCAGATTTGCTCTTGGAGAATGGTGCTCGGCTTGAGGCTGCTGATATAAATGGATACAGGGTATTATTTTCTCTACAGGCAGTTCACCTTGCTGCTCAATATGGACAAACATCTTTCTTAAATCACATCATTGTAAAGTACAATGCTGATTTTGATGCACCTGATAACGGGGGACGAAGTCCTCTTCATTGGGCTGCATACAAGGGATATGCTGATACAATTAGATTACTTCTATTTCGAGATGCAAGCAAAGGGAGACAAGATAAAGATGGTTGTACACCATTGCACTGGGCTGTACTAAGAGGAAATGCAGACGCATGCACTGTGCTTGTACATTCAAGCACAAAGAAGGAACTAATGGTGAAGGACAATGCTGGAGTCACTCCTTTGCAGCTTGCATATGATAAAGGTCATCGGCATGTCGCTCTTTTCCTTTCTAATCAACTGCGGGCTCATAGCAACCACTGGAGAGACAAACTTTGTAGTGGGAGGCTGACAGATAATACTGGCTATGCACCATTATTATTgtgtattataatctttgaaatgaTCCTCTTCATCAACTCAGTCGTTGCAGCTTCTAGTCTTCAAAAGATCACTGCTGTTGTTGGTCTTTGGGCGTGGACAGCTCTTTCTCTGGCAGTTGGATCTCTGATTATGTTCTATAGGTGTAGTAGTAAAGATCCTGGTTATATAAAACGGCCAGAAGATTTGGGTACTCATAGTGATGCAGAGGATCCTTTATTGAATATTGATCTGAATAACTCCTCTCTTTGGGCAGGAAAGTGGTCTCAACTTTGCCCTACATGCAAGATAATAAGACCTGTCCGATCTAAGCATTGCCCTACTTGTAAGCGTTGTGTGGAACAGTTTGACCACCATTGCCCATGGATATCTAACTGTGTTGGAAAGAGGAACAAAAgggatttctttatttttgtctGCTTGGCAACTTCAACTTCATTCATTAGTGCTGCTGTTGCGGTTCAAAGGATTTGGACATCAACACTAGCATTGCCCACAGGAGAAACATGGATCCATCATGTGTTAGTACAACATCCAGGTGCTGTAGTGTTCCTGGTGTTGGACACTGTTATTTTCATTGCTGCTGTATCTTTGACGATAAATCAGGCTTCCATGATAGCTCGGAATATCACCACAAATGAAGTAGCAAACTCTGCTCGTTATGATTATCTTCGTGGTCCTGATGGGAAGTTCAGAAATCCATATAACCATGGCTGTTGGAAGAATTGCTCTGACTTTGTTTTTCAGGGCTATACTGATGATGATGACATTGCTTGGCCGCCATTACAGCAAGTGGCGACTTAA 1644 0.4264 MASSEIEVVSSDPKTPKIPNEPPVVDVYSACTYGDFVKLRKFVEQDGASVSVPDANGYYALQWASLSNFPDIVQYVIKHGGDVNATDLMQQTALHWAAVRGSTTVADLLLENGARLEAADINGYRVLFSLQAVHLAAQYGQTSFLNHIIVKYNADFDAPDNGGRSPLHWAAYKGYADTIRLLLFRDASKGRQDKDGCTPLHWAVLRGNADACTVLVHSSTKKELMVKDNAGVTPLQLAYDKGHRHVALFLSNQLRAHSNHWRDKLCSGRLTDNTGYAPLLLCIIIFEMILFINSVVAASSLQKITAVVGLWAWTALSLAVGSLIMFYRCSSKDPGYIKRPEDLGTHSDAEDPLLNIDLNNSSLWAGKWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFVCLATSTSFISAAVAVQRIWTSTLALPTGETWIHHVLVQHPGAVVFLVLDTVIFIAAVSLTINQASMIARNITTNEVANSARYDYLRGPDGKFRNPYNHGCWKNCSDFVFQGYTDDDDIAWPPLQQVAT 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2580 547 SMART ANK_2a 162 191 IPR002110 GO:0005515
Sto13g2580 547 SMART ANK_2a 89 118 IPR002110 GO:0005515
Sto13g2580 547 SMART ANK_2a 128 158 IPR002110 GO:0005515
Sto13g2580 547 SMART ANK_2a 230 259 IPR002110 GO:0005515
Sto13g2580 547 SMART ANK_2a 56 85 IPR002110 GO:0005515
Sto13g2580 547 SMART ANK_2a 195 224 IPR002110 GO:0005515
Sto13g2580 547 ProSiteProfiles DHHC domain profile. 370 420 - -
Sto13g2580 547 ProSiteProfiles Ankyrin repeat region circular profile. 162 188 - -
Sto13g2580 547 Gene3D - 200 252 IPR036770 -
Sto13g2580 547 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Sto13g2580 547 ProSiteProfiles Ankyrin repeat region circular profile. 56 87 - -
Sto13g2580 547 Gene3D - 14 128 IPR036770 -
Sto13g2580 547 Pfam DHHC palmitoyltransferase 370 497 IPR001594 GO:0016409
Sto13g2580 547 ProSiteProfiles Ankyrin repeat region circular profile. 89 120 - -
Sto13g2580 547 Pfam Ankyrin repeats (3 copies) 40 119 IPR002110 GO:0005515
Sto13g2580 547 Pfam Ankyrin repeats (3 copies) 134 219 IPR002110 GO:0005515
Sto13g2580 547 ProSiteProfiles Ankyrin repeat profile. 89 121 IPR002110 GO:0005515
Sto13g2580 547 SUPERFAMILY Ankyrin repeat 28 251 IPR036770 -
Sto13g2580 547 ProSiteProfiles Ankyrin repeat profile. 162 194 IPR002110 GO:0005515
Sto13g2580 547 PANTHER PROTEIN S-ACYLTRANSFERASE 24 3 536 - -
Sto13g2580 547 PANTHER - 3 536 - -
Sto13g2580 547 Gene3D - 129 199 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2580 Sto-Chr13 31915135 31923516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2580 20 250 Miscellaneous Gene Families AT1G07710 27.660 1.07e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2580 K20032 - gmx:100798740 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2580 13 31915135 31923516 Sto13g2580 13 31915135 31923516 ECH