Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2576 ATGGAGCTGAATAGCATTAAAGATGCATTTGACCGTGTATCTAAGAAGCAAAAGTtatcttcttccaagtctcaAGAAGTCATTGATCAGGTGGGGCTTGAAATTGAACAGACTTTGGCAAATTTCCAGTCAGCTCAGGACTCACCAGCCTCTGTTGACCAGAAATCTATTCTTACTGAACTCAAGTCTAAGCTTAATGCTCTTGGGGCACTTCAACAGTTAGATGGACCACAGAAAGAATTGAACATTATTGCAACCCATTTTTATCGTCAGGGTTTATTTGATCTTGGAGATAGCATCATAAATGAGGCCGGGGAGCCTAATGCAACTGCACTAAGATCTCAATTCTTGGAAATGCATCAGATTCTTGAAGCTGTGAAGGTTAGGAACCTTCAGCCTGCTCTCACCTGGGTCTCTTCCAACCAAGAGAAACTCATCCAGAATGGTTCCAATCTCGAGCTTAAGCTTCACAAACTGCAATTTGTAGAGGTCTTGCAAAATGGAACTCGAGCAGACGCCTTAAAATATGCCCGAACTTATCTTGCTCCTTTTGCTTCCCTCCACAAGGATGAGTTCCAAAAGCTTATGGGTTGCCTCTTGTATGCAGGAAGGCTTGACAGCTCCCCTTATTCTGAGTTGATGTCTCCAGTCCACTGGGAGATGACGACCGATGAGCTGATTAGGCAGTTCTGCACTCTCTTGGGGCAATCCTACGAGAGTCCACTGCGCGTGGCTGTCACTGCTGGAGTTGAAGGGTTGCCCACACTCTTAAAGCTGGCAAATGTAATGGCAGCAAAGAAGCAAGAGTGGCAAGCAATGAAACAGTTGCCAGTGCCTGTAGAACTGGGGAAGGAATTTCAGTTTCACTCAATTTTCGTGTGTCCCGTGAGTAGGGATCAAGGGAGTGATGAGAATCCACCTATGCTGCTTCCATGCTTGCATGTTCTTTGCAAGCAATCAATCATGAAGTTGTCAAAAAGCAGCACTCGAACTTTCAAGTGCCCATACTGTCCAGCAGAAGCTACAGTCGCACAGTGCAGACAGCTCTATTTCTGA 1056 0.447 MELNSIKDAFDRVSKKQKLSSSKSQEVIDQVGLEIEQTLANFQSAQDSPASVDQKSILTELKSKLNALGALQQLDGPQKELNIIATHFYRQGLFDLGDSIINEAGEPNATALRSQFLEMHQILEAVKVRNLQPALTWVSSNQEKLIQNGSNLELKLHKLQFVEVLQNGTRADALKYARTYLAPFASLHKDEFQKLMGCLLYAGRLDSSPYSELMSPVHWEMTTDELIRQFCTLLGQSYESPLRVAVTAGVEGLPTLLKLANVMAAKKQEWQAMKQLPVPVELGKEFQFHSIFVCPVSRDQGSDENPPMLLPCLHVLCKQSIMKLSKSSTRTFKCPYCPAEATVAQCRQLYF 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2576 351 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 115 172 IPR006595 -
Sto13g2576 351 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 83 351 IPR045098 GO:0004842|GO:0043161
Sto13g2576 351 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 1 83 IPR045098 GO:0004842|GO:0043161
Sto13g2576 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 350 IPR013083 -
Sto13g2576 351 ProSiteProfiles Gid-type RING finger profile. 294 337 IPR044063 GO:0061630
Sto13g2576 351 SUPERFAMILY RING/U-box 288 348 - -
Sto13g2576 351 Pfam RING-type zinc-finger 294 335 IPR027370 -
Sto13g2576 351 SMART ring_2 294 337 IPR001841 -
Sto13g2576 351 Pfam CTLH/CRA C-terminal to LisH motif domain 115 256 IPR024964 -
Sto13g2576 351 SMART ctlh 115 172 IPR006595 -
Sto13g2576 351 CDD dRing_Rmd5p_like 292 340 IPR037683 -
Sto13g2576 351 SMART toby_final6 168 262 IPR013144 -
Sto13g2576 351 PANTHER PROTEIN RMD5 HOMOLOG 83 351 - -
Sto13g2576 351 PANTHER PROTEIN RMD5 HOMOLOG 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2576 Sto-Chr13 31885306 31886463 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2576 K23333 - gmx:100799584 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2576 13 31885306 31886463 Sto13g2576 13 31885306 31886463 ECH