Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2570 ATGGCGTCCGCCGTCCTTGCTAACCGGAACGAACCGAATTGGCCGCAGCACAGAGGCGGTGGAGCAGGATTCATGGGCAAAGTACCAGTTCCTttctctaaccctaaccctaaccctacccCTAAATTCGGAAACAGCAAGAGAACCCAATCGGCGTCGGATGATGCGTCTTCTATCAACAGGAGATCGAATGAAATCAATCATTCCCAATATTTAACCTTCAATATAGCCTCGTACACAAAGAAGGAGCTAAGCGAGCTTAAAAATCGTTTAGTCTCGGAGCTCGAACAGATTCGGCAGCTCAAAAATCGAATTGAATCCGGTGAATTTCAGCCTAGACCGAGCTTCAACGGTCCGACAAAGAAATCATCCAGCAAAAAGATTTCTGGGAACAAACGACCCTTGCCGTTGAACTCGTCGAAGGAATTGAAACGATCGCATTCGGATATCGGAAATTTGATGAAGGCATGTGCGCAGGTATTGCAAAAGCTGATGAAGCACCGACATGGGTGGATCTTCAACGCTCCCGTCGATGTTGTGGCAATGGGTCTTCATGACTACTGTGACATAATTAAGCGACCGATGGATCTTGGCACCGTTAAGTCGAATCTTGCGAAGAATATGTATGGGACGCCATCAGATTTCGCTTCTGATGTGCGATTGACGTTCAAAAATGCCTTGACCTATAATCCCAAGGGTCATGATGTGTATATTATGGCCGATCAACTTCTAACGAGGTTCGAAGAACTTTATAGACCAATTCATGAGAAATTTGAAGATTGGCTAAAACAAGATCGCGTCTATGATGAGGAATTGCAAGGTAGCTCATGGAACTATGTAGAACCAGAGAGGGTGAAGGAGGACAACCCAACCCCTCCTGCGAGACTACCGGAGCCAGTTCTGGCTCCTGCAAGTTCGTCGGACCCACCGATGCTGCAGTCTCCAGTGCGTACTCCATCACCAATGCGGGCACCTCCAGTGAAGCCTGTGAAGCAACCAAAGCCAAAAGCGAAGGACCCAAACAAGAGGGAGATGAGTCTCGAGGAAAAGCATAAGTTGAAAATGGAACAGGTGGTCCAGATTATAAGGAAGAGAAATGGACATTTGGAGCAGGATGGGGATGAGATCGAGCTTGATATTGAAGCTGTTGATACAGAGACACTCTGGGAACTTGACAGATTGGTGACCAACTGGAAAAAGATGGTGAGCAAAATTAAGCGGCAGGCGCTAATGAATAATAATATGGCGTCAAGCAAGGGCAATGGGGAATTACATTCGAGTGACAAGGTTGATGCTGCACCAACGGAGGTCAAGAAGCTTAAGAAAATGGAAGCTGGGGACGAGGATGTTGACATTGGGGATGAGATGCCCATGAGCATCTTTCCCCCAGTGGAGATTGAGAAAGATAAAGATGTCGGTGGAGGTCATGCAAGCAGTAGTTCTAGCAGCTCAAGCAGTTCGAGTAGTGATTCCTCCTCTTCTAGTGATTCGGATTCGGGGAGTTCCTCTGGTAGTGATTCTGATGCGGATAATGGGCACTTGTAG 1545 0.4634 MASAVLANRNEPNWPQHRGGGAGFMGKVPVPFSNPNPNPTPKFGNSKRTQSASDDASSINRRSNEINHSQYLTFNIASYTKKELSELKNRLVSELEQIRQLKNRIESGEFQPRPSFNGPTKKSSSKKISGNKRPLPLNSSKELKRSHSDIGNLMKACAQVLQKLMKHRHGWIFNAPVDVVAMGLHDYCDIIKRPMDLGTVKSNLAKNMYGTPSDFASDVRLTFKNALTYNPKGHDVYIMADQLLTRFEELYRPIHEKFEDWLKQDRVYDEELQGSSWNYVEPERVKEDNPTPPARLPEPVLAPASSSDPPMLQSPVRTPSPMRAPPVKPVKQPKPKAKDPNKREMSLEEKHKLKMEQVVQIIRKRNGHLEQDGDEIELDIEAVDTETLWELDRLVTNWKKMVSKIKRQALMNNNMASSKGNGELHSSDKVDAAPTEVKKLKKMEAGDEDVDIGDEMPMSIFPPVEIEKDKDVGGGHASSSSSSSSSSSSDSSSSSDSDSGSSSGSDSDADNGHL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2570 514 PANTHER OSJNBA0053K19.4 PROTEIN 44 511 - -
Sto13g2570 514 Pfam Bromodomain extra-terminal - transcription regulation 354 396 IPR027353 -
Sto13g2570 514 PRINTS Bromodomain signature 168 181 IPR001487 GO:0005515
Sto13g2570 514 PRINTS Bromodomain signature 184 200 IPR001487 GO:0005515
Sto13g2570 514 PRINTS Bromodomain signature 200 218 IPR001487 GO:0005515
Sto13g2570 514 PRINTS Bromodomain signature 218 237 IPR001487 GO:0005515
Sto13g2570 514 MobiDBLite consensus disorder prediction 475 514 - -
Sto13g2570 514 MobiDBLite consensus disorder prediction 105 144 - -
Sto13g2570 514 MobiDBLite consensus disorder prediction 39 64 - -
Sto13g2570 514 Coils Coil 81 104 - -
Sto13g2570 514 SMART bromo_6 146 256 IPR001487 GO:0005515
Sto13g2570 514 ProSiteProfiles NET domain profile. 325 406 IPR027353 -
Sto13g2570 514 MobiDBLite consensus disorder prediction 279 345 - -
Sto13g2570 514 Gene3D - 121 269 IPR036427 GO:0005515
Sto13g2570 514 MobiDBLite consensus disorder prediction 113 136 - -
Sto13g2570 514 Pfam Bromodomain 157 241 IPR001487 GO:0005515
Sto13g2570 514 SUPERFAMILY Bromodomain 145 260 IPR036427 GO:0005515
Sto13g2570 514 MobiDBLite consensus disorder prediction 1 64 - -
Sto13g2570 514 PANTHER TRANSCRIPTION FACTOR GTE2 44 511 - -
Sto13g2570 514 MobiDBLite consensus disorder prediction 424 448 - -
Sto13g2570 514 Gene3D - 338 405 IPR038336 -
Sto13g2570 514 MobiDBLite consensus disorder prediction 314 331 - -
Sto13g2570 514 MobiDBLite consensus disorder prediction 416 514 - -
Sto13g2570 514 CDD Bromo_plant1 153 251 IPR037377 -
Sto13g2570 514 ProSiteProfiles Bromodomain profile. 165 237 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2570 Sto-Chr13 31824570 31826326 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2570 - - gmx:100819363 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2570 13 31824570 31826326 Sto13g2570 13 31824570 31826326 ECH